Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSETEP00000010734pdb,1x7y,B,#167395078.723
ENSTTRP00000014592pdb,3exf,H,#130358094.833
ENSCGRP00000023725pdb,3exg,H,#132329086.174
ENSSHAP00000009797pdb,2ozl,B,#11271094.465
ENSLACP00000013979pdb,3exf,D,#165393088.146
ENSPSIP00000005907pdb,3exg,B,#11277087.365
ENSDORP00000020615pdb,3exg,T,#131319079.331
ENSMEUP00000006938pdb,3exf,F,#129357083.587
ENSOARP00000014037pdb,3exf,B,#131355087.842
MGP_SPRETEiJ_P0037266pdb,2ozl,D,#130376087.608
ENSAMXP00000017321pdb,1x7z,B,#158386085.714

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.1170.3740.5090.0820.5720.346

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.4249649368863960.07152875175315570.01122019635343620.01963534361851330.01122019635343620.01122019635343620.01262272089761570.437587657784011

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)