Protein PDP1

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
ENSPMAP00000006399	pdb,4yzg,B,#1	136	345	8.6e-14	28.436
ENSPMAP00000006399	pdb,4yzg,A,#1	136	345	8.6e-14	28.436
ENSPMAP00000006399	pdb,4yzh,A,#1	136	345	3.56e-13	27.962
ENSMGAP00000016796	pdb,4yzg,B,#1	221	434	1.47e-12	28.241
ENSMGAP00000016796	pdb,4yzg,A,#1	221	434	1.47e-12	28.241
ENSOANP00000012546	pdb,4yzg,B,#1	230	443	4.53e-12	29.224
ENSOANP00000012546	pdb,4yzg,A,#1	230	443	4.53e-12	29.224
ENSMODP00000009178	pdb,4yzg,B,#1	247	460	4.9e-12	29.911
ENSMODP00000009178	pdb,4yzg,A,#1	247	460	4.9e-12	29.911
ENSMGAP00000016796	pdb,4yzh,A,#1	221	434	6.17e-12	27.778
ENSXETP00000032182	pdb,4yzg,A,#1	272	484	6.69e-12	28.837

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.083	0.182	0.735	0.327	0.473	0.2

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.51219512195122	0.163956639566396	0.0487804878048781	0.02710027100271	0.0203252032520325	0.021680216802168	0.00542005420054201	0.200542005420054

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

0.000000047 1.264891860 2.175380001 0.788751116 0.019382163 5.669562314 0.007832586 0.038915061 0.000018521 5.858927239 3.394631905 0.036029972 0.140901824 0.000584054 0.019953196 3.408678769 0.023283348 0.256657100 0.281999055 5.981321954 7.062469680 0.288139206 0.080291537 0.050172005 0.003319659 0.000395654 7.307184447 0.004069875 0.000123584 0.019983739 0.016827629 0.201927328 0.224067728 0.131280247 0.116235803 6.069054611 0.000136420 0.000000001 0.000407509 0.004958435 0.000116496 0.198288464 0.011580566 0.000651823 5.026992106 0.000037683 0.000000001 0.000000001 0.000011037 0.000003014 0.160204588 0.264055157 0.000000001 0.000030225 5.409575093 11.881064504 0.000000001 0.000000247 0.240796939 0.000218960 0.148439516 0.000718453 0.000003794 0.160257849 0.002073213 7.197045128 6.312971156 0.000000001 0.000000001 0.000007101 0.210062816 0.004778540 0.018882967 0.000000459 0.012839830 0.144521245 0.012717775 12.919712237 0.045447753 0.000000001 0.000000001 0.071202595 0.000002572 0.000000095 0.000004162 0.000000066 0.184307420 0.002932201 0.003567900 0.000029944 36.778215429 0.857433112 0.000000001 0.000000001 0.000000001 0.000000001 0.000000010 0.000000001 0.000000001 0.965095114 0.000000001 0.000000002 1.140303504 12.867960459 20.292962139 73.463342385 0.000000001 0.000000003 0.347114825 1.931006668 0.000000572 0.122668184 0.000132976 0.000010642 0.000177691 0.000000028 0.186096682 0.000160581 40.079061824 17.622220879 0.000002836 0.000000039 2.031550359 0.000000189 0.000000009 0.000000001 0.000000001 2.923207182 0.000000017 0.000000026 0.000000001 0.000000003 0.000000006 0.000003151 0.000000027 151.925793389 0.000001643 1.121921770 2.329757112 0.000001200 0.000000414 0.000000001 0.000000001 0.000000001 5.528383209 0.001242530 0.000175374 0.000000205 0.000000004 0.000000169 0.000000027 159.918126776 1389.387496387 0.000000047 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000391282 1.141655859 16.195290430 38.800814468 113.944359903 0.000000055 0.000000174 0.000000163 17.093927425 0.000000001 0.445009021 0.022633513 0.001006262 0.971635748 0.073545148 0.000148802 0.001815799 0.262055023 0.002831064 0.003090863 8.784027163 14.341655811 61.088190214 20.730377847 0.000008343 0.000028555 0.000105384 0.002106520 0.102697000 0.077875500 0.073054500 0.082813800 0.093378100 0.096480600 0.084683700 0.106031000 0.102140000 0.092498100 0.045106500 0.022265300 0.007798960 0.003640540 0.001805230 0.000574266 0.000614603 0.001745320 0.002690880