Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSLACP00000017546pdb,4yzg,A,#1703081.38e-1929.435
ENSLACP00000017546pdb,4yzg,B,#1703081.38e-1929.435
ENSLACP00000017546pdb,4yzh,A,#1703086.61e-1929.032
ENSPSIP00000000169pdb,4yzg,A,#12344454.35e-1530.734
ENSPSIP00000000169pdb,4yzg,B,#12344454.35e-1530.734
ENSPSIP00000000169pdb,4yzh,A,#12344451.98e-1430.275
ENSPMAP00000006399pdb,4yzg,A,#11363458.6e-1428.436
ENSPMAP00000006399pdb,4yzg,B,#11363458.6e-1428.436
ENSACAP00000002322pdb,4yzg,A,#12394441.04e-1331.905
ENSACAP00000002322pdb,4yzg,B,#12394441.04e-1331.905
ENSPMAP00000006399pdb,4yzh,A,#11363453.56e-1327.962

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.0990.0930.8080.1090.6250.266

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.4383561643835620.2166874221668740.00996264009962640.00373599003735990.00498132004981320.00498132004981320.00373599003735990.317559153175592

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)