Protein PMPCA

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
YHR024C	pdb,1hr6,A,#1	14	470	0	99.562
YHR024C	pdb,1hr6,G,#1	14	470	0	99.562
YHR024C	pdb,1hr7,A,#1	14	470	0	99.562
YHR024C	pdb,1hr6,E,#1	14	468	0	99.56
YHR024C	pdb,1hr6,C,#1	16	468	0	99.558
ENSXETP00000001656	pdb,1hr6,C,#1	73	514	4.22e-81	37.527
ENSXETP00000001656	pdb,1hr6,G,#1	73	514	4.37e-81	37.527
ENSXETP00000001656	pdb,1hr6,A,#1	73	514	4.37e-81	37.527
ENSXETP00000001656	pdb,1hr7,A,#1	73	514	4.37e-81	37.527
ENSXETP00000001656	pdb,1hr6,E,#1	73	514	5.94e-81	37.527
ENSFDAP00000014774	pdb,1hr6,A,#1	44	485	6.06e-80	37.31

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.121	0.247	0.632	0.366	0.404	0.23

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.4321608040201	0.0793969849246231	0.00904522613065327	0.00402010050251256	0.00201005025125628	0.00100502512562814	0.00100502512562814	0.471356783919598

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

3.484300907 0.000001560 2.073415119 0.000000021 0.000016671 5.023119256 0.000009344 0.408083554 0.021195021 8.127723450 0.000000021 0.000244889 0.043698165 0.001279015 0.002225194 0.000000021 0.143980106 0.000843294 0.028239358 7.362382166 6.697678650 0.000000021 0.075512599 0.095611317 0.208796654 0.078281288 8.865911641 0.021072643 0.000000021 0.062759218 0.001300449 0.081211521 0.105966714 0.095452886 0.494881666 7.312921978 0.000000021 0.000405263 0.022252917 0.116992344 0.129554308 0.223749047 0.037330341 0.002960194 6.387052180 0.000000021 0.036269098 0.000000021 0.009793889 0.246888064 0.037091164 0.090822758 0.189638182 0.006057505 6.434213207 0.000000021 0.036525729 0.000030897 0.034643813 0.000845160 0.129199001 0.259092030 0.101980777 0.123012048 0.004637130 7.233059804 0.000000021 0.000070424 0.072083046 0.105256052 0.127315531 0.000008215 0.023729017 0.260727831 0.051546847 0.000166039 0.000000040 11.667641322 0.000000021 0.070234085 0.000000004 0.702782374 0.046629063 0.366024524 0.000000003 0.000030396 0.001737318 0.723903058 0.000000001 0.000000024 15.569210682 0.000000021 0.000000001 0.000000001 0.053696738 0.000000019 0.004508689 0.000000002 0.000000275 0.925499504 0.000019492 0.018006255 0.102623130 0.000140609 4.608718455 0.000000021 0.000000001 0.000000001 0.000075127 0.000000054 0.009437112 0.390493908 0.000000015 0.000076705 0.006280603 0.770552678 3.384597572 0.000123719 0.677982262 555.326624927 0.000000021 0.000000001 0.682979457 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000014929 6.224537846 0.000018207 0.000000046 0.000000510 0.000000021 0.000000001 0.000000001 0.675499181 0.014638382 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000104 0.000000998 0.000000375 0.000069832 35.561862225 4.951632281 0.000000106 0.000000021 0.975397878 0.000000011 0.002093200 0.098872752 0.335341643 0.000001146 6.104553911 0.017132057 0.000001518 0.036463463 0.000000026 0.000000034 0.000538119 84.546074874 4.499082053 0.000000106 0.000629969 0.000000021 0.004303528 2.507023724 0.429938512 2.511433357 1.884890616 0.001040067 5.852581691 0.495766603 0.958765812 6.289815401 0.157346021 4.941566364 0.002576861 0.000363233 0.001439525 0.000000106 0.000000137 591.635655043 0.004822890 0.150800000 0.083004400 0.075478700 0.081428400 0.089030100 0.088368600 0.072456400 0.087671900 0.087383800 0.082270300 0.050958200 0.028031800 0.005758130 0.004513740 0.003845540 0.000942444 0.001650430 0.000710755 0.000873794