Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSOPRP00000005351pdb,3h1i,A,#150486061.187
ENSGMOP00000003638pdb,3cwb,A,#132473059.142
ENSETEP00000004650pdb,3tgu,N,#151488057.631
ENSOGAP00000004613pdb,2bcc,A,#151489058.409
ENSOGAP00000004613pdb,1sqp,A,#146489057.528
YLR163Cpdb,1hr8,D,#120462099.097
ENSCSAP00000007945pdb,3h1j,N,#142478060.046
ENSONIP00000010160pdb,1nu1,A,#144482058.864
ENSCSAP00000007945pdb,2a06,N,#137476057.596
ENSSSCP00000016352pdb,3l75,N,#150486061.187
ENSOGAP00000004613pdb,3h1j,N,#151487060.274

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.0920.2350.6730.3710.1880.441

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.6083707025411060.1106128550074740.01345291479820630.001494768310911810.01644245142002990.002989536621823620.002989536621823620.243647234678625

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)