Protein PNPT1

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
ENSONIP00000001246	pdb,4aim,A,#1	47	754	3.24e-149	37.343
ENSGACP00000014379	pdb,4aim,A,#1	31	741	7.82e-149	38.022
ENSORLP00000005430	pdb,4aim,A,#1	48	757	1.13e-148	37.413
ENSTRUP00000013202	pdb,4aim,A,#1	46	754	1.24e-148	37.151
ENSLOCP00000018921	pdb,4aim,A,#1	56	766	1.71e-148	37.883
ENSJJAP00000017805	pdb,4aim,A,#1	49	752	1.18e-147	37.307
ENSPFOP00000010380	pdb,4aim,A,#1	31	739	1.19e-147	37.274
ENSDNOP00000024986	pdb,4aim,A,#1	49	752	5.46e-146	36.835
ENSACAP00000003735	pdb,4aim,A,#1	55	760	6.4e-146	37.063
ENSMODP00000002420	pdb,4aim,A,#1	48	756	1.01e-145	36.96
ENSXETP00000013380	pdb,4aim,A,#1	54	759	1.19e-145	37.063

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.016	0.03	0.954	0.577	0.13	0.293

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.654977375565611	0.200226244343891	0.0158371040723982	0.00452488687782805	0.0135746606334842	0.00113122171945701	0	0.10972850678733

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

0.465174780 0.043874367 2.045098603 0.350286941 0.025093371 6.027391929 0.000021192 0.062303225 0.179444034 7.571594351 0.000000013 0.000058449 0.108817385 0.102565306 0.114472303 0.229271801 0.378348761 0.182120270 0.427012798 7.783626147 7.582372343 0.000000013 0.000274314 0.015735192 0.116164511 0.129483376 9.086612291 0.181702818 0.000000013 0.017755591 0.059380276 0.001168418 0.277582006 0.447052560 0.245404482 7.404210076 0.000000013 0.000846450 0.000000192 0.017956535 0.187250823 0.011525898 0.458614760 0.233292392 7.406030227 0.000000013 0.015212154 0.000000148 0.000188756 0.119241791 0.107176523 0.015878019 0.262343867 0.083023625 7.406172681 0.000000013 0.004096527 0.059748173 0.003473044 0.059326012 0.031685645 0.247265544 0.357815911 0.494727457 0.201966277 7.281809247 0.000000013 0.036387972 0.015445934 0.021594351 0.074397244 0.013599223 0.145917090 0.119258353 0.124450592 0.418147290 0.083821237 8.043859612 0.000000013 0.000000001 0.000000001 0.000000103 0.000000002 0.101212587 0.000000048 0.000000001 0.112615585 0.549445128 0.266499595 0.723108723 15.102775156 0.000000013 0.028121888 0.000000001 0.137674258 0.000000004 0.007116835 0.240559189 0.636949223 0.200953233 0.068895089 0.157966156 0.319734289 0.024755202 15.551395381 0.000000013 0.000000001 0.000000001 0.056507970 0.291059108 0.000001219 0.004960254 0.085866404 0.000054970 0.000000001 0.924572645 0.488371454 1.096907370 0.000000007 9.128969059 0.000000013 0.177360432 0.000000001 0.000000002 0.000000001 0.000000045 0.000000001 1.204212511 1.237458352 1.585896265 0.000000004 0.221529929 0.000000003 2.711744245 2.695783688 19.911001123 0.000000013 0.000000001 0.184846872 0.000007479 0.000000001 0.337243696 0.000259701 0.000000001 0.000044615 0.512780047 0.718281316 0.289623076 0.000000003 0.454032538 0.000000020 3.764324195 12.231695369 0.000000013 0.000000001 0.000000001 0.000000002 0.000000001 0.000000001 0.000000001 0.227593558 0.000000001 0.000000001 0.000000001 1.065880299 0.297511930 3.055298314 3.218918686 0.000000035 0.000000081 13.053817407 0.000000013 0.000000001 0.093478592 0.004882952 0.044038381 0.264301374 0.139962779 0.009501254 0.189155666 0.036378521 0.210816525 0.005040262 0.376721540 1.917104223 0.000554514 0.000000035 2.654246318 0.639424184 20.007553172 0.007799520 0.173930000 0.087361500 0.065836200 0.082948100 0.082831200 0.091883000 0.073927400 0.074252600 0.079459800 0.067356200 0.047314600 0.030931600 0.013541100 0.004879620 0.002832620 0.001235070 0.003690070 0.001999160 0.005990390