Protein POLG2

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
ENSCATP00000009669	pdb,3ikm,F,#1	59	485	0	89.93
ENSNGAP00000014817	pdb,3ikm,C,#1	47	475	0	78.555
ENSCGRP00000019510	pdb,3ikm,C,#1	14	441	0	75
ENSTTRP00000008317	pdb,3ikm,C,#1	60	482	0	82.033
ENSSHAP00000015013	pdb,3ikm,F,#1	32	459	0	71.562
ENSMICP00000024739	pdb,3ikm,C,#1	59	485	0	85.246
ENSMOCP00000026822	pdb,3ikm,F,#1	27	453	0	76.112
ENSVPAP00000010016	pdb,3ikm,F,#1	57	484	0	82.71
ENSMPUP00000014638	pdb,3ikm,C,#1	59	485	0	82.67
ENSLAFP00000009384	pdb,3ikm,F,#1	59	485	0	77.986
ENSFCAP00000003240	pdb,3ikm,F,#1	59	485	0	83.138

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.068	0.328	0.605	0.025	0.566	0.408

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.629508196721312	0.1	0.0344262295081967	0.0131147540983607	0.00655737704918033	0.00163934426229508	0.00163934426229508	0.213114754098361

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

0.111952998 0.117903438 1.375312286 0.000000020 0.378341098 1.587046850 0.000000020 0.228469871 0.616702291 2.168276127 0.000000020 0.042783710 0.040044662 0.509788858 1.051034468 0.711398261 0.309735606 0.660649329 0.944089490 3.420844379 3.349036549 0.000000020 0.089206432 0.086673023 0.154439864 0.827554866 4.224998579 1.272322938 0.000000020 0.030315614 0.076398779 0.080273156 0.316908768 1.196032513 0.903619753 3.652933788 0.000000020 0.101858765 0.021234726 0.014236138 0.008166504 0.183429773 0.830057675 2.603545254 6.318792042 0.000000020 0.000000001 0.082303892 0.089781257 0.190400823 0.356361053 0.098643532 0.438884966 1.520745744 5.327087669 0.000000020 0.020130316 0.023192357 0.117299443 0.205399392 0.143155801 0.454798164 0.586794954 0.484607439 1.526404430 5.794259211 0.000000020 0.000400239 0.049516482 0.005213007 0.000000007 0.109285398 0.770656309 0.247615261 0.210992906 0.858068623 0.447687529 6.125332652 0.000000020 0.008921405 0.000050399 0.000000066 0.346090108 0.170510999 0.067044569 0.000296667 0.717863317 0.036594447 1.636775415 2.092592559 7.989638969 0.000000020 0.124070376 0.027637703 0.042763336 0.000870690 0.282252032 0.367289493 0.000006975 0.000000663 0.000004794 0.655284356 0.000753997 0.206140735 7.682843440 0.000000020 0.000000001 0.000000001 0.000000001 0.167893660 0.000000001 0.470696879 0.000000001 0.000143762 0.000000003 1.519824156 0.004375203 0.000000003 0.000000006 5.651049560 0.000000020 0.000000001 0.000000229 0.225354626 0.102007490 0.000000001 0.486931174 0.001382084 0.002381426 0.801690075 0.441600836 0.284970491 0.000000003 0.163106393 0.988595029 2.847456779 0.000000020 0.000054588 0.000000001 0.000000001 0.237454060 0.002568681 0.000000529 0.861670279 0.000132162 0.193382769 0.007586066 0.378147891 0.366109214 0.743219855 2.957534480 0.000000028 1.878392390 0.000000020 0.000000004 0.035189345 0.079559617 0.209901988 0.013199000 0.401216852 0.195183918 0.000036761 0.196213173 0.000076685 0.102030761 0.000000003 0.000000005 0.000000009 0.000000028 0.000000017 6.365977379 0.000000020 0.072063258 0.000000001 0.000000001 0.000012308 0.207191497 0.308929926 0.702441090 0.001595626 0.441355721 0.545084349 0.617006016 0.328829933 0.001427874 1.985715368 0.000000028 0.000000017 0.000000016 2.890493744 0.005123150 0.103671000 0.099324100 0.086302200 0.085928200 0.087965000 0.079861800 0.077461300 0.081035900 0.071014600 0.071927400 0.054373700 0.034263000 0.021205300 0.010556800 0.003597210 0.005912130 0.006434660 0.006779430 0.007263580