Protein POLRMT

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
ENSCAFP00000042219	pdb,1oy2,A,#1	1157	1332	2.26e-76	67.797
ENSCAFP00000042219	pdb,2l1c,A,#1	1157	1332	2.26e-76	67.797
ENSCAFP00000042219	pdb,1shc,A,#1	1157	1332	3.86e-76	67.797
ENSCAFP00000042219	pdb,1n3h,A,#1	1157	1332	3.99e-76	67.797

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.031	0.061	0.908	0.322	0.383	0.294

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.366806136680614	0.191073919107392	0.0167364016736402	0.00743840074384007	0.00511390051139005	0.00418410041841004	0.00232450023245002	0.406322640632264

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

0.004578315 0.041727838 1.828831401 4.123539288 0.000004626 5.961673571 131.422708422 0.023318721 0.001467686 5.849507033 48.545625876 0.000842129 0.166261545 0.015696819 0.025942802 126.503044595 0.066763548 0.068470200 0.085119335 7.395165068 9.056434974 56.813626775 0.007400003 0.000186940 0.079325387 0.016000586 9.123876716 0.061693707 21.472215977 0.001950955 0.035372134 0.016514697 0.101027571 0.325343093 0.040491532 7.160995270 24.856571590 0.005392880 0.032361444 0.036479161 0.085440687 0.112671340 0.124129415 0.001824640 6.111047669 39.397203660 0.000063214 0.010544829 0.017822239 0.121066256 0.222000322 0.037690313 0.009696436 0.026333354 5.219156454 50.076294252 0.000000001 0.000000007 0.000001014 0.060540916 0.142983375 0.082454544 0.290189734 0.126649334 0.025772256 5.824474588 56.291764526 0.000185039 0.000000001 0.000000003 0.238854514 0.083980384 0.057289526 0.095960316 0.248710856 0.082708745 0.059498942 9.769804148 25.002224252 0.032375245 0.000000005 0.006188709 0.065620768 0.036043344 0.000040450 0.283764706 0.001591199 0.619879466 0.011493373 0.004459964 20.521812126 108.189075811 0.270275673 0.000000829 0.188710873 1.787241611 0.230094707 0.001953407 0.480466584 0.065268112 0.000016894 0.000000164 0.395986587 0.001444372 80.911142584 15115.972046169 4.666514887 0.006152390 0.017997047 8.683034962 3.400701669 15.594273405 6.012271790 15.623063235 3.459570044 22.879431798 7.690904596 33.923354425 4.332032195 2.100607765 0.000047833 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000542 0.000253496 0.000000004 0.000000001 0.000000003 0.000000012 0.328303713 0.000001194 0.000047833 0.000000001 0.000000001 0.000000001 0.000000002 0.000000001 0.000000001 0.186504300 0.000003577 0.000000001 0.002020182 0.000000001 0.000000003 0.000000012 39.432803940 0.000001194 1433.194972470 0.008618333 0.000000001 0.000000001 0.000000004 0.000011103 0.000004523 0.000000684 0.251066333 1.114711931 0.000105790 0.000003145 0.000000141 0.000000432 0.000105166 0.086313379 0.001721367 0.016275241 199.335055066 23562.869811871 0.000040985 0.011676088 8.686037760 50.060735969 3.401816523 16.352393119 1.461590003 4.385340732 77.811708754 46.305524830 7.460555113 36.197688658 18.305295520 0.019325312 354.901073392 0.001389312 874.439694838 0.003222582 0.000002091 0.129574000 0.074298600 0.069619200 0.086028100 0.072655300 0.075067300 0.079548300 0.090195500 0.103871000 0.103062000 0.071599900 0.033236100 0.008684700 0.001301490 0.000083744 0.000292231 0.000673740 0.000140681 0.000065059