Protein PPA2

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
YBR011C	pdb,8prk,A,#1	2	283	0	99.291
YBR011C	pdb,1e9g,A,#1	2	285	0	99.648
YBR011C	pdb,1m38,A,#1	2	283	0	100
YBR011C	pdb,2ik2,B,#1	2	282	0	99.288
YBR011C	pdb,1huj,B,#1	2	282	0	99.288
YBR011C	pdb,1m38,B,#1	2	283	0	100
YBR011C	pdb,2ihp,B,#1	2	284	0	99.647
YBR011C	pdb,1e6a,B,#1	2	283	0	99.645
YBR011C	pdb,1ypp,A,#1	2	283	0	99.645
YBR011C	pdb,1ypp,B,#1	2	283	0	99.645
YBR011C	pdb,8prk,B,#1	2	283	0	99.291

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.017	0.03	0.954	0.049	0.062	0.889

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.315112540192926	0.15112540192926	0.022508038585209	0.0418006430868167	0.0128617363344051	0.00803858520900321	0.00482315112540193	0.443729903536977

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

3.683525380 0.000001353 2.256621452 0.090328898 0.008380046 4.961746229 0.000000087 0.120342904 0.041476901 5.066671863 0.000000087 0.002565034 0.015219654 0.288230772 0.102466335 0.000000087 0.199340495 0.133144467 0.293221566 6.602902932 6.981885358 0.000000087 0.051422688 0.062324381 0.103219452 0.033379040 8.428092326 0.060314152 0.000000087 0.029580873 0.070329728 0.000232225 0.179992481 0.156115696 0.169894042 8.317588413 0.000000087 0.018110570 0.010814485 0.132302107 0.017152462 0.023792802 0.282714550 0.020345071 6.120108467 0.000000087 0.000870125 0.025833012 0.070719768 0.058709123 0.107744588 0.110617933 0.191164752 0.026758342 7.059358570 0.000000087 0.017796177 0.015800777 0.058417566 0.000000306 0.135025204 0.282330903 0.000585788 0.265454917 0.037278300 7.754833010 0.000000087 0.004129789 0.003303566 0.032172436 0.000000122 0.366266155 0.135097135 0.002311024 0.044660358 0.222769847 0.033529464 7.752448635 0.000000087 0.000091327 0.044405070 0.001943422 0.000000032 0.081166396 0.308797334 0.308144122 0.003254048 0.120738940 0.208411093 0.000274424 9.646867171 0.000000087 0.008135607 0.000010620 0.026759916 0.000003374 0.239804630 0.016522442 0.087570493 0.000006586 0.670410786 1.077676241 0.613246384 0.051027436 19.332510845 0.000000087 0.000000034 0.002437591 0.101509875 0.530017394 0.000093845 0.009319335 0.020979657 0.533645348 0.253802734 0.002191067 2.583470783 2.854694862 8.514057167 0.000652971 0.000000087 0.000000001 0.000000008 0.001531817 0.000015295 0.000000611 0.000057227 0.000190811 0.500055595 0.000254457 0.387824828 4.324360097 0.113970450 0.003877103 14.207494279 0.200411577 0.000000087 0.235462566 0.000000167 0.778086799 0.000000020 0.540744586 0.000002573 0.002636858 0.000000001 0.000000001 0.000000007 0.005392121 1.347627050 0.000027097 0.000000199 0.001102030 234.040336302 0.000000087 0.411830775 0.000000369 0.520544807 0.001694730 1.465252915 0.075918976 0.005760113 0.549736206 0.002484807 0.000000731 0.593068480 0.000000042 0.906477763 1.945026577 0.000179777 64.669434084 116.636748264 0.000000087 0.000000001 0.000000001 0.000000988 0.597895589 0.000000690 0.005313294 0.000000002 0.000008922 0.001123638 3.232737953 0.001434214 1.456905422 2.327525630 0.000000091 0.000002298 24.400968781 74.208220538 0.711930518 0.001143820 0.104169000 0.090893000 0.084675900 0.076867100 0.078599400 0.095660800 0.075167100 0.088137000 0.079048400 0.071534100 0.058930800 0.048494500 0.029828200 0.008932680 0.001202690 0.001804330 0.001732490 0.001481830 0.001697090