Protein PPIF

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
Y75B12B.5	pdb,1e3b,A,#1	1	172	2.56e-126	100
Y75B12B.5	pdb,1dyw,A,#1	1	172	2.56e-126	100
ENSBTAP00000055082	pdb,2r99,A,#1	138	301	1.14e-120	98.171
ENSNGAP00000007101	pdb,4tot,B,#1	47	209	3.18e-119	99.387
ENSNGAP00000007101	pdb,4tot,A,#1	47	209	3.18e-119	99.387
ENSBTAP00000055082	pdb,1zmf,A,#1	139	300	3.87e-119	98.148
ENSCCAP00000010954	pdb,4tot,A,#1	45	207	1.47e-118	98.773
ENSCCAP00000010954	pdb,4tot,B,#1	45	207	1.47e-118	98.773
YDR155C	pdb,1ist,B,#1	2	162	7.68e-118	100
YDR155C	pdb,1vdn,A,#1	2	162	7.68e-118	100
YDR155C	pdb,1ist,A,#1	2	162	7.68e-118	100

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.07	0.102	0.828	0.052	0.136	0.812

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.0195476123987713	0.00516615470538956	0.0772130689751466	0.0544540631108629	0.0657637531415806	0.0531974308852276	0.0586428371963139	0.666015079586708

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

1.671003507 0.040129280 2.803561111 0.053023710 0.039324994 7.702581079 0.293622959 0.206875714 0.466924492 4.748950408 0.018355079 0.032293982 0.068051515 0.099999103 0.892282645 0.091856524 0.083556292 0.098523443 2.096366857 4.221583557 6.655306582 0.012253231 0.020476514 0.049952103 0.106610234 0.307539664 5.219931722 1.421688426 0.014376805 0.016067892 0.039110278 0.035090761 0.158403738 2.244085273 0.182946392 4.626651306 0.004537446 0.012657536 0.013696049 0.023390610 0.098343116 0.145392836 0.129430289 0.762504510 4.554663914 0.000726222 0.003881545 0.012960823 0.009201251 0.095194616 0.133691164 0.035064687 0.106018324 0.981976317 3.913387235 0.010588924 0.022685745 0.019314608 0.005347312 0.104723454 0.083865098 0.096038941 0.048796043 0.133219662 0.441706277 3.847018983 0.000352057 0.012456735 0.011458735 0.001880453 0.190676397 0.029098942 0.023047607 0.041533292 0.050533369 0.220283689 0.549041742 6.004985329 0.000223160 0.028344692 0.037772956 0.009117355 0.270069904 0.040089566 0.059359232 0.008128221 0.060529980 0.037424960 0.076790893 0.036442058 8.854906438 0.000928313 0.088827690 0.055889744 0.056166075 0.124830045 0.248222012 0.110697283 0.080305527 0.134664018 0.052892049 0.147759361 0.167529682 0.087500645 7.992762364 0.054117960 0.072554922 0.143094622 0.116746990 0.274145303 0.064260635 0.049639718 0.043459624 0.066325444 0.058104252 0.074484018 0.169045271 0.571497845 0.491857085 10.044869959 0.015104436 0.001532585 0.091740368 0.004503869 0.181583229 0.015263684 0.269424715 0.069718503 0.143179981 0.307942170 0.132495290 0.078076385 0.729906009 1.598046987 1.782156804 15.965787168 0.274925112 0.071183740 0.001785576 0.000037371 0.291662369 0.012416459 0.000167990 0.000553384 0.000984453 0.001095479 0.057863362 0.076061040 0.367581361 0.469171693 2.520790052 3.418011670 28.195183904 0.000250577 0.032724298 0.001494012 0.002643358 0.382469807 0.142873988 0.204375493 0.003776853 0.105154317 0.118285440 0.081146092 0.140896727 0.075330759 1.773370096 0.058368415 2.449071394 4.861798435 11.390166920 0.114466090 0.005444256 0.035921467 0.054958079 1.244373910 0.299022935 0.607090220 1.556626050 0.307391243 3.875662397 1.324230779 0.275770875 0.669717750 1.324366707 1.287629233 4.665243284 14.189559494 16.061001517 18.184661549 0.009811290 0.079267400 0.044888200 0.055712100 0.085316800 0.067927900 0.066017700 0.071784100 0.095890500 0.106243000 0.120479000 0.098047700 0.058154200 0.017409000 0.006565640 0.004646210 0.003196780 0.003295000 0.002519420 0.002827740