Protein PRDX5

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
YLR109W	pdb,4h86,A,#1	1	176	5.38e-130	100
YLR109W	pdb,4dsq,B,#1	3	176	1.43e-128	100
YLR109W	pdb,4dsr,C,#1	3	176	1.43e-128	100
YLR109W	pdb,4dsr,B,#1	3	176	1.43e-128	100
YLR109W	pdb,4dsr,D,#1	3	176	1.43e-128	100
YLR109W	pdb,4owy,B,#1	3	176	1.43e-128	100
YLR109W	pdb,4owy,D,#1	3	176	1.43e-128	100
YLR109W	pdb,4dsq,A,#1	3	176	1.43e-128	100
YLR109W	pdb,4dsq,D,#1	3	176	1.43e-128	100
YLR109W	pdb,4dsr,A,#1	3	176	1.43e-128	100
YLR109W	pdb,4dss,A,#1	3	176	3.3e-127	99.425

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.215	0.331	0.455	0.078	0.605	0.317

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.395161290322581	0.0833333333333333	0.0376344086021505	0.0188172043010753	0.00537634408602151	0	0.00268817204301075	0.456989247311828

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

4.573700086 0.000025758 1.310330765 0.000000063 0.513072747 2.619201049 0.000000078 0.369329732 1.866499387 3.391476624 0.357023583 0.139670560 0.645976258 0.265814393 1.766857532 0.000000454 0.216321072 0.709131951 2.933944796 3.757344521 4.125377610 0.000000013 0.001515479 0.100110253 0.877419386 2.092873746 3.752851873 1.595456024 0.000000013 0.073212574 0.518888350 0.393667911 0.735511083 1.177695445 2.901228564 4.380806689 0.000000013 0.109175075 0.624181422 0.064561119 0.547104711 1.034007111 0.745660785 1.017583433 5.540302752 0.000000013 0.108265671 0.003990182 0.000000808 0.615447588 0.629375703 0.073534729 0.458467991 1.403375147 2.433338468 0.000000013 0.043776807 0.215132160 0.068387620 0.401873122 0.133028289 0.000769453 1.088006026 0.692916723 1.930213623 4.736968857 0.000000013 0.096189190 0.129128530 0.001173317 0.176084812 0.225574665 0.241833332 0.573985214 0.993117685 0.520066678 0.779047488 5.449685942 0.000000013 0.000000080 0.114414569 0.000000001 0.363960542 0.347208130 0.075255657 0.000000015 0.390704187 0.184828546 0.752389749 1.547351551 2.501525064 0.000000013 0.076892561 0.000009973 0.000000001 0.000000001 0.000000001 0.000171239 0.004429092 0.586283804 1.091445736 0.708696780 1.000971314 0.906677444 0.794439842 0.000000013 0.000000001 0.000001308 0.096952922 0.000000144 0.464771522 0.508379926 0.209698367 0.000204405 0.000000013 1.807944128 1.278142200 0.000000003 1.151036296 4.008923465 0.000000013 0.000000001 0.203850285 0.551894350 0.000000528 0.000000012 0.041680837 0.000949225 1.268466927 0.000002364 1.251437025 0.001118950 3.243018806 0.000000004 0.000002270 3.348933330 0.000000013 0.000000001 1.543468963 0.000014367 0.000031660 0.000000003 0.000002001 3.517342826 0.000000004 2.445551772 0.000000003 0.646726672 1.523864254 2.591893057 0.000000007 0.000000008 9.416910376 0.000027427 0.020122454 0.000000002 0.000000001 0.000000001 0.008907818 0.771174531 0.571401425 0.000000003 0.000000003 0.482454005 0.000000014 1.272828599 0.000000004 5.573230983 0.000000008 12.515838238 0.000000035 0.000000013 0.000002201 1.375010693 1.453675010 0.000466211 5.097553925 0.879129172 0.000049615 0.000003114 8.604905127 0.107498730 0.002265522 0.000006033 0.000000044 0.000000007 0.000000012 5.755747193 0.000000379 19.307155455 0.007946870 0.188805000 0.105213000 0.104231000 0.088195000 0.086828900 0.089445900 0.073148400 0.051203700 0.036353800 0.037786400 0.030886000 0.031670800 0.023661200 0.014512300 0.013185900 0.007341410 0.002849560 0.003969000 0.002765160