Protein PTCD1

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
FBpp0076868	pdb,4ozs,A,#1	147	328	5.77e-22	32.418
ENSACAP00000012682	pdb,4ozs,A,#1	197	369	1.07e-21	33.526
ENSPMAP00000010634	pdb,4ozs,A,#1	2	169	1.11e-21	32.738
ENSACAP00000012682	pdb,4ozs,A,#1	227	385	1.4e-20	30.818
ENSCPOP00000001611	pdb,4ozs,A,#1	150	321	4.6e-20	34.302
ENSGALP00000007493	pdb,4ozs,A,#1	395	566	5.51e-20	33.14
ENSTSYP00000030627	pdb,4ozs,A,#1	150	321	1.3e-19	34.302
ENSXETP00000021779	pdb,4ozs,A,#1	143	313	1.47e-19	31.579
FBpp0076868	pdb,4ozs,A,#1	183	344	2.29e-19	30.247
ENSMGAP00000004001	pdb,4ozs,A,#1	198	369	3.82e-19	32.558
ENSCGRP00000020659	pdb,4ozs,A,#1	150	321	4.55e-19	33.526

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.12	0.128	0.752	0.103	0.357	0.54

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.358732876712329	0.228595890410959	0.0136986301369863	0.00599315068493151	0.00256849315068493	0.00342465753424658	0.00513698630136986	0.381849315068493

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

0.291998478 2.213907552 1.556819416 18.100824770 0.008383063 5.209599691 97.723348542 0.508786284 0.270667826 5.588663236 62.585944123 0.068355405 0.369509875 0.416167516 0.421929481 122.470355505 0.088270474 0.154913323 1.340065180 6.329982778 7.808966877 121.947625745 0.017508707 0.060368053 0.243346366 0.611450625 6.082065864 0.352387949 10.022003656 0.094861454 0.102628809 0.052978630 0.545192622 0.623807097 0.285729086 4.406577870 25.307471278 0.036158942 0.042066058 0.019030124 0.006942579 0.442319754 0.638947193 0.071000667 4.501474315 17.478122943 0.021289089 0.033334879 0.000037244 0.221635134 0.250432070 0.068678555 0.073370950 0.012215122 4.188588372 3.624706169 0.002523332 0.017126756 0.005191167 0.010501960 0.086662221 0.186454566 0.013478606 0.179476939 0.004418626 4.722176841 14.492715271 0.000000040 0.000001585 0.202048560 0.008023937 0.211170849 0.159414557 0.309746110 0.025323610 0.108469896 0.009129545 12.191243137 0.037316697 0.000000001 0.000000001 0.000000007 0.061893766 0.000002722 0.000000002 0.156445761 0.000076731 0.042170017 0.009632805 0.000013447 17.605400604 0.136504016 0.062545452 0.000000001 0.019394582 0.000363469 0.000000001 0.464702812 0.000000001 0.000000686 0.000009716 0.689813528 0.000176777 0.004090701 28.700643687 0.404994683 0.000000008 0.000000001 0.000000063 0.000000063 0.000000132 2.957421101 0.011319559 0.000001197 0.000007867 0.000940550 0.000000802 0.000000033 0.113685318 352.320216613 0.001524664 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000003 1.296946277 0.000000003 0.000003978 0.000606211 0.000000032 0.000000005 0.000007618 137.910825302 1592.547373073 0.000016335 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000001090 0.019418247 1.062881824 2.493416912 0.000585523 0.233714855 0.000221661 1082.332467819 13.708606183 0.027587717 0.000000047 0.427793713 0.503408764 0.000488793 0.000000682 0.000008733 0.000003661 0.061327969 0.072472064 1.955452894 1.309510058 0.104646231 0.730410734 347.813978897 426.843820783 0.039749936 20.958509967 465.685241542 0.000001752 0.000039404 0.022526141 1.705730173 0.101177096 0.248075971 0.498754573 0.051973610 5.023169166 4.750761114 0.856409700 8.533437513 24.425349012 32.018870501 163.102314789 68.669907297 278.865337783 632.899697657 0.000006122 0.138113000 0.103545000 0.084810800 0.080245400 0.078285900 0.074323200 0.079290100 0.101403000 0.093723700 0.083857300 0.042419300 0.021501300 0.014354800 0.001684110 0.000362020 0.000471719 0.000221740 0.000468673 0.000912114