Protein PTCD3

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
ENSFCAP00000008312	pdb,4ozs,A,#1	145	303	8.08e-15	33.537
ENSFCAP00000008312	pdb,4ozs,A,#1	159	303	1.9e-14	34.247
ENSCAFP00000011252	pdb,4ozs,A,#1	260	378	1.62e-13	35.833
ENSNGAP00000015862	pdb,4ozs,A,#1	210	350	2.74e-13	34.667
ENSMODP00000011708	pdb,4ozs,A,#1	214	352	3.7e-13	30.769
ENSMPUP00000009090	pdb,4ozs,A,#1	246	378	4.47e-13	32.847
ENSCATP00000026240	pdb,4ozs,A,#1	244	383	1.01e-12	31.724
ENSMPUP00000009090	pdb,4ozs,A,#1	260	378	1.12e-12	33.613
ENSSTOP00000028167	pdb,4ozs,A,#1	271	418	1.48e-12	32.68
ENSNGAP00000015862	pdb,4ozs,A,#1	229	372	1.64e-12	31.25
ENSMUSP00000080743	pdb,4ozs,A,#1	243	375	1.92e-12	34.286

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.031	0.038	0.931	0.047	0.63	0.322

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.488574537540805	0.233949945593036	0.0250272034820457	0.00326441784548422	0.00108813928182807	0.00217627856365615	0.00217627856365615	0.243743199129489

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

0.097350264 1.064485493 1.602208970 41.248451229 0.000002933 6.775343559 116.257539450 0.014591249 0.000494352 8.517400093 71.025868413 0.026982474 0.187525353 0.049079386 0.060290642 168.683685856 0.158760421 0.023777440 0.466967667 7.717016653 10.369837054 61.805631553 0.013662569 0.113345624 0.047788612 0.273770206 9.005177959 0.077897597 5.210551142 0.000170268 0.011513419 0.027666214 0.044860838 0.236662085 0.002959704 7.360110049 9.545463122 0.000000001 0.000102290 0.012569607 0.087086611 0.026032322 0.277458387 0.000022571 5.545891175 17.834172972 0.001346115 0.008043365 0.071688618 0.137122172 0.321910240 0.084137198 0.000010830 0.000111283 5.248556347 44.840594477 0.000000003 0.000634109 0.016506593 0.007419356 0.346067821 0.105226682 0.116230677 0.002501898 0.000009714 6.909864078 91.047000887 0.000000006 0.068560542 0.001861852 0.007823337 0.065597267 0.054437908 0.389823905 0.060002027 0.020956397 0.005913883 9.383423064 68.074869337 0.000000219 0.002022406 0.068887093 0.096567268 0.017867161 0.433696256 0.000000715 0.378402351 0.010964538 0.018992139 0.004998650 26.161814062 185.333056599 0.000004521 0.575423588 0.035811203 0.000029222 0.569280557 0.003456727 0.006014901 0.019400245 0.000001041 1.915338951 0.708664709 0.459873588 38.584168157 268.321414869 1.446102355 0.042580873 0.088597600 0.028427909 0.065906877 0.021856340 0.039253645 0.134869889 0.028618676 0.163055630 24.677079930 10.930269009 103.638640429 97.440748295 0.162394259 0.000000001 0.000000085 0.000002138 0.000000048 0.000359824 0.000003973 0.000000066 0.003888280 6.277828401 0.010261710 0.003351895 0.005426308 0.007111869 11.565581265 9.605938930 0.002742907 0.000000181 0.000007006 1.381395954 0.000000001 0.000097654 0.000000009 0.000000001 0.000187837 0.341100034 0.114706314 0.005056629 0.001384142 3.297522361 0.151682959 757.358296760 495.536443280 2.883211633 0.000000001 0.000000004 0.010922938 0.000010006 1.735043305 0.006608456 0.000000662 1.461263086 0.000084908 0.010169128 4.785223908 0.185107927 0.377191413 125.278148956 23.624894948 281.704977484 321.658572393 1.186236218 0.435722631 0.000000004 0.000001080 0.000003767 0.001661111 0.000272194 0.000000665 0.000260381 0.075533869 3.107675913 0.247227403 0.231989028 12.380143113 6.095463816 8.883322439 1283.196169085 115.385018712 723.040963776 0.000001590 0.164330000 0.090966900 0.068416300 0.086051000 0.074933000 0.083718500 0.074948200 0.090757100 0.092733500 0.078449300 0.049276900 0.029348500 0.011180000 0.001421900 0.000214180 0.000199639 0.001525770 0.000915565 0.000611716