Protein PTPMT1

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
ENSRNOP00000013584	pdb,3rgo,A,#1	95	251	2.13e-111	94.904
ENSMAUP00000009185	pdb,3rgo,A,#1	37	193	1.35e-110	93.631
ENSCGRP00001010198	pdb,3rgo,A,#1	37	193	3.41e-110	92.994
ENSMAUP00000009185	pdb,3rgq,A,#1	36	191	1.98e-109	93.59
ENSRNOP00000013584	pdb,3rgq,A,#1	94	249	2.76e-109	94.231
ENSCGRP00001010198	pdb,3rgq,A,#1	36	191	2.56e-108	92.308
ENSMOCP00000021622	pdb,3rgo,A,#1	37	193	8.55e-108	91.083
ENSMOCP00000021622	pdb,3rgq,A,#1	36	191	9.53e-106	90.385
ENSNGAP00000017303	pdb,3rgo,A,#1	37	193	4.03e-104	87.898
ENSNGAP00000017303	pdb,3rgq,A,#1	36	190	3.89e-103	88.387
ENSAMEP00000008037	pdb,3rgo,A,#1	38	194	8.36e-103	89.172

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.071	0.174	0.755	0.234	0.263	0.502

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.348979591836735	0.0408163265306122	0.0122448979591837	0.00204081632653061	0.00408163265306122	0.0163265306122449	0.0244897959183673	0.551020408163265

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

0.360868676 0.000090163 2.913604490 0.000005892 0.036110198 4.431155302 0.000000004 0.116253771 0.916608082 5.758196128 0.000001393 0.000108971 0.412446465 0.326698137 0.986816540 0.520919616 0.157184111 0.626488631 0.173721514 4.046931969 6.409459289 0.000000004 0.000000120 0.005602068 0.106592851 0.685555131 4.930187425 0.576533050 0.000000004 0.000003265 0.495011930 0.431967147 1.038697164 1.078632970 0.109209531 7.490073391 0.048015282 0.032383198 0.000336729 0.000012427 0.051600837 0.653727968 0.207940070 0.459417088 6.948775056 0.000000004 0.000000127 0.033496918 0.058198870 0.373222184 0.295049880 0.362896416 0.696426887 0.190841224 6.366392065 0.000000004 0.005033845 0.000009205 0.000001018 0.000005526 0.929615157 0.041977942 0.105309178 1.179412972 0.385864024 5.206897593 0.000000004 0.000000001 0.140456732 0.003171612 0.000010128 0.071037008 0.464513972 0.185711740 0.523165072 0.256600519 0.191599976 8.310438482 0.123147397 0.000000001 0.000000002 0.000000002 0.000021174 0.684378875 0.072338225 0.260380571 0.016960720 0.219159789 1.210646876 1.482851352 9.137658132 0.000000004 0.000000001 0.000000002 0.000000002 0.316080341 0.144150769 0.345464569 0.356062715 0.334833460 0.463365249 0.982689578 1.556627193 4.281913415 7.112926797 0.000000004 0.000000001 0.000000002 0.000000002 0.133195185 0.004481233 0.871620732 1.024540185 0.900790086 0.189115728 0.000128001 2.734940981 1.542111813 0.128189850 6.981281178 0.000000004 0.000000001 0.000000002 0.000000002 0.000000002 0.000000001 0.000000001 0.000000001 0.000000001 0.214098495 0.000000002 0.526456520 0.169723185 1.365072406 0.000000008 0.000000020 0.000000004 0.000000001 0.000028759 0.000000002 0.000000002 0.000000728 0.520050303 0.000000001 0.110530788 0.000000001 0.216208136 0.000000511 2.273015720 1.134920951 0.000000008 0.000003193 0.000000022 0.000000004 0.000000001 0.000000004 0.000000003 0.000002512 2.664433807 0.000001894 0.000102939 3.036107551 1.731193139 0.844293782 0.164745694 0.000371915 4.139929587 6.640446591 0.000023068 0.000000022 0.000000009 0.000000004 0.080587340 0.000000002 0.000000002 0.202974262 0.341945463 0.000002524 0.000014943 0.133008175 0.893935621 0.323424335 3.187931731 5.037057622 4.634449316 1.566125584 2.525845542 0.000000127 2.431639606 22.890564728 0.028346600 0.147172000 0.066428500 0.065649900 0.059187800 0.072343700 0.077450200 0.085855100 0.080371000 0.076304600 0.066226000 0.052246100 0.041381500 0.030108000 0.012629000 0.005101460 0.004524570 0.011505200 0.003110880 0.014058300