Protein PTRH2

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
ENSGGOP00000023684	pdb,1q7s,A,#1	64	180	8.36e-83	100
ENSANAP00000006926	pdb,1q7s,A,#1	64	180	1.94e-81	98.291
ENSCAFP00000026048	pdb,1q7s,A,#1	63	179	4.3e-80	95.726
ENSTSYP00000022060	pdb,1q7s,A,#1	64	180	5.39e-80	96.581
ENSPVAP00000001453	pdb,1q7s,A,#1	63	179	9.9e-80	94.872
ENSMLUP00000022567	pdb,1q7s,A,#1	63	179	1.47e-79	95.726
ENSECAP00000002482	pdb,1q7s,A,#1	63	179	4.21e-79	94.017
ENSFDAP00000001856	pdb,1q7s,A,#1	61	177	7.6e-79	94.872
ENSSSCP00000018721	pdb,1q7s,A,#1	63	179	9.16e-79	94.017
ENSSTOP00000022626	pdb,1q7s,A,#1	63	179	1.02e-78	94.872
ENSPCAP00000010595	pdb,1q7s,A,#1	63	179	1.25e-78	94.017

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.238	0.258	0.503	0.311	0.255	0.434

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.175392670157068	0.0994764397905759	0.00523560209424084	0	0.00523560209424084	0.00523560209424084	0	0.709424083769634

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

0.769749935 0.000000005 2.281678577 0.000000005 0.045400005 9.073009310 0.000000005 0.020673375 1.006195923 8.113262935 0.000000005 0.018081157 0.189078853 0.000021735 0.815052449 0.167514979 0.169334244 0.506628621 1.555832571 6.494053583 6.630276128 0.000000005 0.001376484 0.269532162 0.133529528 0.687273504 6.613072077 1.566064455 0.000000005 0.000198022 0.002436576 0.226655875 0.535321666 0.300800729 0.556097189 6.084146666 0.000000005 0.000000059 0.347633815 0.000471712 0.469430953 1.348836991 0.038852366 0.969071376 5.052488550 0.000000005 0.001815702 0.006415130 0.000652547 0.227576998 0.073160180 0.004632237 0.238435954 1.147834905 5.771707717 0.000000005 0.005834730 0.000671043 0.007968371 0.000389755 0.000006840 0.150685272 0.158768593 0.072449311 1.980576821 5.204290388 0.000000005 0.009724988 0.215790234 0.000000237 0.000251003 0.206465496 0.040675341 0.009194624 0.000010629 0.137588479 0.873567914 7.239945763 0.000000005 0.095222269 0.158440317 0.000825262 0.023319783 0.000009640 0.085719940 0.000470270 0.128954405 0.000012452 0.286404542 0.133676598 10.761191435 0.000000005 0.000000001 0.000000002 0.000000002 0.726298114 0.316894115 0.000000053 0.000000002 0.000000003 0.421613690 0.700254067 0.560512416 0.085283129 6.429776362 0.000000005 0.000000001 0.000001588 0.000007076 0.000002895 0.000000002 0.000000002 0.613827319 0.000052714 0.000100238 0.002674817 0.000357048 0.896909154 5.624540650 10.564388709 0.000000005 0.030204994 0.000000002 0.000000002 0.483218237 0.001636889 0.000000006 0.903035102 0.000000001 0.000000919 0.000008596 0.589481380 0.313601819 2.437430441 4.540149046 4.750355803 0.000000005 0.000000001 0.000000002 0.010186870 2.120810637 0.000000002 0.000000002 0.000000002 0.506194033 0.000000001 0.000000001 0.315769510 0.179599957 0.000007073 0.000000013 11.138031878 0.850237934 0.000000005 0.000000001 0.000000002 0.000000089 2.253213705 0.000000002 0.000000005 0.002036993 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000003 0.000000013 0.000000014 0.000000016 0.000000019 0.000000005 0.000000001 0.000000002 0.000000002 0.000000002 1.122387029 0.028423411 0.000000004 0.000000001 0.000000158 1.743762312 0.000000059 0.000000040 0.000000003 0.000000013 0.000000014 0.000000016 0.000000019 0.000000091 0.018743100 0.152248000 0.062976900 0.047690800 0.057589300 0.053301400 0.055080300 0.052284900 0.075435500 0.078648300 0.094975100 0.112838000 0.078211600 0.028573000 0.007727830 0.007047430 0.006232820 0.005281800 0.001095630 0.004018240