Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSLAFP00000029139pdb,1vs3,A,#1272562.48e-1427.542
ENSLAFP00000029139pdb,1vs3,B,#1272562.48e-1427.542
ENSDARP00000122503pdb,1vs3,A,#1762992.51e-1426.087
ENSDARP00000122503pdb,1vs3,B,#1762992.51e-1426.087
ENSDNOP00000022739pdb,1dj0,B,#1873503.48e-1425.275
ENSDNOP00000022739pdb,2nqp,B,#1873503.48e-1425.275
ENSDNOP00000022739pdb,2nqp,C,#1873503.48e-1425.275
ENSDNOP00000022739pdb,1dj0,A,#1873503.48e-1425.275
ENSDNOP00000022739pdb,2nr0,A,#1873503.48e-1425.275
ENSDNOP00000022739pdb,2nr0,C,#1873503.48e-1425.275
ENSDNOP00000022739pdb,2nr0,B,#1873503.48e-1425.275

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.0660.1360.7980.1110.4950.394

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.4132231404958680.1088154269972450.04958677685950410.01515151515151520.01101928374655650.00688705234159780.00688705234159780.388429752066116

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)