Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSPTRP00000084184pdb,2e7g,A,#1802043.41e-8195.2
ENSNLEP00000010219pdb,2e7g,A,#1802043.22e-7891.2
ENSRROP00000012058pdb,2e7g,A,#1862045.1e-7592.437
ENSPANP00000006340pdb,2e7g,A,#1862049.59e-7591.597
ENSMNEP00000020373pdb,2e7g,A,#1862041.07e-7491.597
ENSCCAP00000014978pdb,2e7g,A,#1802041.37e-7488
ENSCSAP00000014272pdb,2e7g,A,#1862046.08e-7490.756
ENSECAP00000006256pdb,2e7g,A,#1281522.58e-7384
ENSAMEP00000010925pdb,2e7g,A,#1281522.85e-7383.2
ENSANAP00000023658pdb,2e7g,A,#1802045.52e-7387.2
ENSTSYP00000016063pdb,2e7g,A,#1802051.81e-7284.127

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.0630.1410.7960.0090.3250.666

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.3303730017761990.2468916518650090.04085257548845470.01243339253996450.005328596802841920.001776198934280640.007104795737122560.355239786856128

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)