Protein RDH13

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
ENSNGAP00000005271	pdb,1wmv,A,#1	49	101	3.49e-32	96.226
ENSFCAP00000023651	pdb,1wmv,A,#1	49	101	4.33e-32	94.34
ENSMOCP00000013275	pdb,1wmv,A,#1	49	101	1.58e-31	94.34
ENSACAP00000010134	pdb,1wmv,A,#1	49	101	1.68e-31	94.34
ENSFALP00000007147	pdb,1wmv,A,#1	49	101	2.3e-31	92.453
ENSOCUP00000002165	pdb,1wmv,A,#1	49	101	6.25e-31	96.226
ENSOANP00000007143	pdb,1wmv,A,#1	26	77	8.35e-31	88.462
ENSBTAP00000032547	pdb,1wmv,A,#1	49	101	1.23e-30	94.34
ENSLACP00000017019	pdb,1wmv,A,#1	49	101	1.63e-30	90.566
ENSOPRP00000014864	pdb,1wmv,A,#1	13	65	1.69e-30	94.34
ENSGALP00000008618	pdb,1wmv,A,#1	49	101	8.45e-30	90.566

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.082	0.216	0.702	0.018	0.332	0.65

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.143426294820717	0.0267501422879909	0.012521343198634	0.00796812749003984	0.00853727945361412	0.0108138873079112	0.00967558338076266	0.78030734206033

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

0.047743804 0.091167918 1.748488099 8.007692546 0.009140132 5.225251902 5.673563076 0.065863463 0.002996379 5.937742737 0.431654983 0.101971660 0.293050869 0.198943063 0.028829677 3.659918887 0.251083971 0.045663564 0.105129456 6.943572288 7.188467541 13.169763330 0.014317729 0.047845481 0.171095179 0.079572517 10.045109634 0.056542662 3.455477062 0.009924965 0.095672837 0.149412965 0.166704724 0.222177634 0.049860022 10.029726220 1.390788331 0.043123593 0.038322223 0.188335232 0.088490155 0.218769034 0.348343338 0.027623395 9.500330755 4.080539099 0.045098023 0.004929661 0.144206454 0.129657909 0.438407268 0.094602366 0.358045260 0.061228509 8.794065875 0.484048823 0.034810025 0.027288400 0.018405190 0.001443494 0.262241777 0.210913061 0.078573687 0.102879403 0.116315291 6.924820735 6.359572257 0.029838554 0.006537374 0.078470159 0.197247237 0.217657154 0.059476676 0.135903399 0.265603658 0.422062557 0.235594004 8.779458440 0.759216322 0.000000521 0.190013088 0.024732788 0.010416363 0.286236803 0.112063175 0.114054788 0.283787508 0.236960496 0.592347146 0.008817151 14.006450396 146.907084587 0.062718828 0.004011615 0.597205161 1.111931334 0.163968125 0.064588877 0.131389091 0.437528711 0.926346434 0.504498559 0.613653713 1.799801526 33.268753655 46.865597568 0.280372994 0.056951976 0.948091236 0.076753985 1.339732324 0.109673876 0.359261917 1.386650680 0.867543414 0.404450539 0.064292660 0.597394040 4.233891262 68.255395907 130.389047427 0.370387966 0.539561340 0.292717337 0.100776140 1.584377538 0.754947859 0.009743603 1.714273902 0.898805051 0.000574952 0.002798758 0.020897697 2.152093782 21.355641633 37.209855031 0.328979652 0.050786070 0.000004230 0.000026033 0.005388855 1.242692683 0.930793121 0.177267467 0.303565413 0.119397109 1.192206621 1.324609415 1.280818506 0.146852682 13.328977020 23.885115513 37.924528302 0.786415522 0.052568227 0.000368602 0.104808950 0.180813436 0.063965111 1.098215094 0.037932551 0.170112028 0.030372872 1.114124062 0.817690741 1.060461054 3.065046341 3.722983197 7.896234131 23.302283177 89.757215349 70.453875741 0.031631438 0.322677353 0.006849924 0.153895922 0.995293942 0.561422292 0.804813336 0.043186607 0.821471853 1.397106133 0.076759105 2.535938632 5.622242110 26.160738022 31.057928239 2.271731806 6.821990687 130.283386184 0.000257912 0.169654000 0.094898200 0.080591400 0.084082800 0.063046400 0.089478100 0.062301900 0.065305200 0.059082000 0.067888400 0.075585300 0.050384500 0.022571600 0.004024810 0.001687260 0.001009120 0.001627780 0.002989560 0.003534180