Protein RPUSD4

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
ENSSHAP00000009597	pdb,1xpi,B,#1	32	229	3.07e-20	29.851
ENSCHOP00000009077	pdb,1xpi,B,#1	5	219	5.04e-20	29.63
ENSPSIP00000016015	pdb,1xpi,B,#1	30	228	6.82e-20	31.156
ENSNGAP00000021761	pdb,1xpi,B,#1	94	333	9.48e-20	30.041
ENSCGRP00000019801	pdb,1xpi,B,#1	99	317	1.12e-19	30.493
ENSODEP00000006094	pdb,1xpi,B,#1	94	291	1.3e-19	31.343
ENSOANP00000011539	pdb,1xpi,B,#1	26	292	1.88e-19	28.044
ENSCPOP00000013493	pdb,1xpi,B,#1	92	315	2.45e-19	31.14
ENSHGLP00100008569	pdb,1xpi,B,#1	94	291	3.02e-19	30.846
ENSFDAP00000005240	pdb,1xpi,B,#1	90	287	3.43e-19	30.846
ENSAPLP00000013051	pdb,1xpi,B,#1	30	222	6.47e-19	29.016

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.025	0.058	0.916	0.02	0.639	0.341

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.269819193324061	0.21557719054242	0.0639777468706537	0.0250347705146036	0.0111265646731572	0.00278164116828929	0	0.411682892906815

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

1.470254324 0.662650850 2.146711020 8.638309036 0.009044033 4.384360713 26.398419737 0.038706232 0.028027331 6.443878845 10.251005669 0.001135059 0.224953076 0.190260608 0.022287920 57.859391558 0.185637510 0.123904527 0.336654208 5.273203717 6.496169165 39.137748331 0.008031525 0.127261816 0.164931254 0.117634895 7.325656728 0.013975881 10.725110341 0.000165048 0.057360365 0.328419949 0.205499738 0.238241994 0.119622274 6.502095664 11.425477628 0.009906551 0.012362774 0.010684159 0.127939877 0.088694828 0.086171019 0.000769919 5.888709018 22.936475684 0.000001130 0.000437423 0.157127057 0.016931073 0.408395990 0.054653281 0.076318871 0.021000455 4.923968671 13.130201957 0.014905878 0.037938420 0.046667907 0.004423054 0.138637853 0.218144536 0.224055681 0.110429137 0.003488657 5.371993282 15.179965843 0.000000017 0.000875409 0.142326022 0.028147009 0.000220644 0.101891917 0.004643229 0.376954851 0.249747882 0.105646532 8.677737920 46.393995823 0.037294595 0.008951362 0.054019719 0.000006464 0.001626994 0.277114620 0.259196789 0.054924675 0.000720363 0.008944704 0.000311363 18.036408868 72.166637517 0.000000001 0.000000001 0.000000002 0.000117583 0.072198441 0.195088112 0.000003476 1.026653839 0.000154345 0.315491972 0.389519070 0.253815743 25.247286113 716.874659204 0.939071663 0.000072440 0.000690406 0.436402048 0.004573583 2.038670320 0.122240582 0.003225560 0.001725036 0.015681823 0.000138111 0.000211372 14.158788987 36.034334722 4786.983405179 0.006700973 0.000008078 0.000076532 1.714706119 0.010660233 0.422047840 1.446046181 0.107651759 1.792782349 2.811129106 0.006014928 0.077666050 4.536135075 22.428210441 1296.286810384 7.340250414 0.003213452 0.000000001 0.000000002 0.000000027 0.000021043 0.232917378 0.000000281 0.963975320 0.036095230 0.359161618 0.007616785 0.000117804 0.000001464 0.000001446 1.215500142 270.285447827 0.003103478 0.153268791 0.000007528 0.000000002 0.000000001 0.000004485 0.000000001 0.000000830 0.021059102 0.045299573 0.570339712 0.841245604 2.249185618 0.444743135 0.511065340 0.000000720 0.000010001 231.525173794 13.530283233 0.000230891 0.244387663 0.000461913 0.000001265 0.419367183 0.002935333 0.000347861 0.006559888 0.390879445 0.132758483 0.000953850 0.186759346 6.625577523 17.030496650 0.000234955 0.004723866 11.561117548 234.826638744 0.000003888 0.104014000 0.067235800 0.059131000 0.084680400 0.082579900 0.088222700 0.078734000 0.086790500 0.106101000 0.100026000 0.074264400 0.039232200 0.015973400 0.004087990 0.001835080 0.000797764 0.001519040 0.002616790 0.002153140