Protein SAMM50

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
ENSONIP00000015100	pdb,4k3c,A,#1	86	469	1.06e-15	26.682
ENSORLP00000014869	pdb,4k3c,A,#1	86	469	3.96e-15	25.408
ENSTRUP00000022328	pdb,4k3c,A,#1	86	469	7.72e-15	25.587
ENSDARP00000058006	pdb,4k3c,A,#1	86	468	1.17e-14	25.935
ENSGMOP00000004871	pdb,4k3c,A,#1	79	462	1.7e-14	25.175
ENSTNIP00000005254	pdb,4k3c,A,#1	86	469	1.72e-14	25.641
ENSGACP00000025550	pdb,4k3c,A,#1	86	469	5.21e-14	25.059
ENSXMAP00000005345	pdb,4k3c,A,#1	84	467	2.17e-13	25.641
ENSAMXP00000002043	pdb,4k3c,A,#1	86	468	2.19e-12	24.533
ENSDARP00000095193	pdb,4k3c,A,#1	86	468	3.62e-12	25
ENSTNIP00000005668	pdb,4k3c,A,#1	43	466	4.75e-12	22.553

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.123	0.216	0.661	0.218	0.628	0.154

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.467722289890378	0.0937880633373934	0.0048721071863581	0	0.00121802679658952	0.00243605359317905	0.00121802679658952	0.428745432399513

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

0.000014353 0.000385978 2.102860360 8.908534793 0.000715935 5.151838254 7.834429422 0.019948778 0.000664922 5.083966900 13.638355133 0.001392715 0.063540233 0.009479890 0.008171692 6.221526196 0.273985655 0.043769197 0.123333473 5.295013827 6.811352579 15.138924609 0.005419801 0.044872171 0.069778111 0.053353568 6.809249338 0.001413413 0.034267167 0.000400245 0.012583337 0.001316430 0.246926851 0.024033894 0.244207674 7.046498824 18.519867367 0.000000475 0.076657667 0.072963834 0.150886955 0.108400039 0.349301333 0.000028913 7.011041019 1.631273422 0.021947297 0.075917170 0.000000752 0.000443454 0.275001385 0.077985007 0.000000009 0.001500981 9.094944263 0.036380750 0.000113026 0.082128192 0.001611816 0.000007831 0.033994127 0.318561879 0.205333374 0.015897449 0.000918887 11.526039800 0.095699078 0.002611336 0.176056292 0.000000031 0.000000014 0.262498897 0.482862835 0.085464629 0.272530716 0.326553346 0.096629665 27.434089599 0.000005961 0.000000930 0.000000001 0.000000001 0.000000001 0.000000620 0.003862986 0.565520039 0.000000001 0.000009293 0.000004695 0.000034301 38.084000538 0.000259234 0.360751135 0.000000001 0.000000001 0.000000001 0.000045279 0.000001087 0.461039738 0.000000001 0.000000002 0.000847965 2.152202431 1.189660006 55.861559261 0.000004593 0.000000534 0.000000011 1.218843197 0.000000001 0.000000001 0.000000001 0.000000157 0.000000001 0.000000002 0.000000002 0.000000004 0.000000006 0.000006205 250.111232361 0.000004593 0.000000001 0.000000001 0.000000001 0.000000001 0.000000004 0.000000001 0.000000317 0.000000001 0.000000002 0.000000002 0.000000004 0.000000006 0.000023201 14.240973787 4243.624377622 0.000004593 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.284768287 0.000000039 5.027092386 0.074099632 0.000017143 0.000000006 0.000003345 256.021768758 0.000001590 0.000027759 0.332769674 0.000000049 0.000004408 0.000212519 5.546539862 7.427027781 0.000157900 13.378160281 0.000105690 0.000019082 0.000001945 0.000011915 0.000100491 0.000003683 0.000002730 0.000000158 0.000000599 0.000000960 101.417719891 0.000000001 0.000000001 0.000000277 0.000009547 0.612954326 0.045074210 1.581264906 0.010130749 3.194108791 0.004472972 0.000275590 6.617663549 0.000403548 67.300495979 3.239341275 0.378977494 0.152407205 0.077304813 0.000021774 0.163406000 0.092005800 0.095228000 0.118608000 0.097468600 0.105916000 0.079371900 0.080291500 0.064095500 0.047980400 0.025841900 0.017835600 0.007292940 0.002135170 0.000632252 0.000166845 0.000535642 0.000229921 0.000936227