Protein SARDH

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
ENSOARP00000018474	pdb,4pab,B,#1	87	904	0	91.32
ENSOANP00000012580	pdb,4pab,A,#1	36	851	0	85.366
ENSACAP00000007316	pdb,1wsr,A,#1	37	405	0	72.629
MGP_CAROLIEiJ_P0035131	pdb,4paa,A,#1	38	852	0	95.46
ENSPCOP00000007094	pdb,4p9s,A,#1	45	822	0	82.805
ENSPFOP00000007627	pdb,4p9s,A,#1	51	864	0	75.553
ENSMEUP00000008711	pdb,4p9s,B,#1	1	764	0	77.966
ENSETEP00000013357	pdb,1wsv,B,#1	33	401	0	81.892
ENSOGAP00000001679	pdb,1wsr,B,#1	33	402	0	92.162
ENSNGAP00000015972	pdb,4p9s,A,#1	51	865	0	93.129
ENSSSCP00000057866	pdb,4pab,B,#1	46	863	0	92.176

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.081	0.304	0.615	0.019	0.388	0.593

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.146417445482866	0.286604361370716	0.0399792315680166	0.0192107995846314	0.0155763239875389	0.00934579439252336	0.00519210799584631	0.477673935617861

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

0.298226386 0.022786276 1.502344137 0.004318118 0.028127603 3.751449342 0.412191862 0.477824175 0.403044573 4.820385865 0.000251249 0.008342157 0.081245644 0.112989254 0.480827889 0.216796940 0.152707842 0.221263279 0.756262661 5.342553293 6.669282749 0.000086673 0.004656917 0.068003899 0.104098740 0.444788020 7.556006791 0.352866004 0.001174183 0.002434588 0.024219678 0.040579546 0.399185464 0.998322805 0.453122155 7.184389919 0.000809510 0.029506712 0.042786020 0.045472845 0.294238161 0.392106429 0.463931376 0.353104557 8.360452950 0.000000695 0.004331837 0.023684648 0.050416031 0.212393533 0.323683274 0.236695712 0.444052768 0.293462684 9.188549959 0.000000004 0.016442270 0.029585883 0.024946667 0.195332157 0.272056395 0.183219583 0.295775831 0.287741038 0.538743860 10.074542762 0.020292161 0.021387205 0.000001101 0.009378746 0.345756116 0.087460599 0.090480466 0.322052463 0.412041781 0.184829840 0.858639922 13.505472043 0.018367805 0.000044983 0.057871979 0.069169434 0.310547952 0.077016923 0.234110456 0.154175269 0.251431419 0.131704311 0.667386580 0.760389249 15.742733639 0.000000004 0.000000002 0.023225814 0.000001239 0.465446135 0.040945195 0.168316473 0.461143590 0.027976162 0.168057885 0.146284209 0.340465413 2.340007481 4.587099421 0.000000004 0.006443493 0.024171462 0.032538034 0.385695074 0.155916401 0.059416678 0.015778729 0.491807704 0.196334982 0.547868146 0.575103122 2.551959396 1.925681021 9.104318366 0.000000004 0.000000005 0.000000569 0.003603989 0.856584482 0.000153220 0.138069200 0.004203377 0.148840695 0.183821267 0.000021409 0.468059722 0.000026063 1.309045447 0.001512542 11.176857803 0.000000004 0.002229923 0.000010200 0.099477888 0.463062616 0.012798099 0.325628078 0.009013351 0.000000038 0.000505310 0.052739196 0.705380442 0.000063233 2.956906908 0.000009009 5.565841594 7.510785123 0.000000004 0.000000001 0.212881617 0.000003832 0.601358195 0.036907765 0.017195008 0.000021580 0.003235188 0.814451593 0.336755967 0.086274233 1.541193014 0.082201147 1.171212581 3.329848854 1.322136331 27.188621249 0.000000004 0.027010745 0.000006218 0.000026594 0.509139205 0.165569875 0.184186509 0.000031277 0.246193292 0.128988575 0.590736004 1.553983947 4.174288514 3.121826866 0.000000102 0.004509210 1.577445519 0.000000270 10.639390591 0.025958300 0.171705000 0.096854300 0.085594600 0.104845000 0.078106600 0.088424500 0.069019500 0.074454100 0.062067900 0.051997000 0.035370700 0.021121300 0.010238300 0.005932800 0.004314370 0.004677740 0.003500560 0.002208040 0.003609690