Protein SCO2

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
YBR037C	pdb,2b7j,B,#1	113	293	1.62e-135	100
ENSP00000252785	pdb,2rli,A,#1	99	266	5.16e-124	99.405
ENSNLEP00000012530	pdb,2gt5,A,#1	132	301	3.63e-122	98.235
ENSNLEP00000012530	pdb,2gvp,A,#1	132	301	3.63e-122	98.235
ENSNLEP00000012530	pdb,2gt6,A,#1	132	301	3.63e-122	98.235
ENSNLEP00000012530	pdb,2gqk,A,#1	132	301	3.63e-122	98.235
ENSNLEP00000012530	pdb,2gqm,A,#1	132	301	3.63e-122	98.235
ENSNLEP00000012530	pdb,2gql,A,#1	132	301	3.63e-122	98.235
YBR037C	pdb,2b7k,B,#1	113	276	2.25e-121	100
ENSNLEP00000012530	pdb,2hrn,A,#1	132	301	6.32e-121	97.647
ENSNLEP00000012530	pdb,2hrf,A,#1	132	301	6.32e-121	97.647

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.06	0.361	0.58	0.015	0.533	0.452

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.408791208791209	0.16043956043956	0.0747252747252747	0.0263736263736264	0.00659340659340659	0	0.0043956043956044	0.318681318681319

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

3.005217489 0.001231659 1.853634784 0.000824745 0.248629608 4.637883897 0.684721013 0.231676931 0.884284467 4.680574190 0.000000056 0.034155305 0.326366942 1.261631851 1.688344365 0.000000146 0.158552228 0.670510677 0.929916065 3.881629306 3.794821153 0.000000056 0.130167044 0.014475001 0.060825368 0.776563833 7.425115879 0.932335184 0.000000056 0.049867435 0.241921399 0.311408790 0.142850603 1.223823961 0.376880605 6.098359849 0.000000056 0.031380130 0.011738076 0.155097815 0.234977059 1.005004421 0.737816664 1.255617720 5.126783904 0.000000056 0.029091260 0.123528006 0.005791931 0.149383319 0.118360882 0.105495092 0.767765343 0.589030503 6.079211472 0.000000056 0.052085505 0.028414757 0.071203121 0.000004159 0.354146625 0.000210848 0.041328587 0.588333153 0.487172471 5.124785050 0.000000056 0.008188381 0.046586228 0.005299286 0.000079337 0.175928490 0.000035732 0.077336152 0.091661263 0.279608658 0.834479081 6.397663528 0.000000056 0.098582232 0.000000029 0.000023344 0.002211868 0.002989170 0.069918884 0.035249373 0.660988796 0.477194987 0.142746327 0.639601437 8.683670714 0.000000056 0.000000008 0.000000001 0.000000123 0.000000004 0.309352195 0.000000479 0.000002668 0.488215813 0.000000078 0.533813796 0.024726737 0.685594529 5.103359487 0.000000056 0.000648752 0.353104793 0.020899980 0.123831170 0.008580481 0.026422388 0.017126473 0.886546805 0.304240862 0.000000628 0.000000001 0.010744250 0.274838159 10.900980438 0.000000056 0.000000001 0.000000002 0.153210842 0.212004408 0.005792788 0.308575362 0.000010787 0.010803844 0.000941736 0.000360714 0.011381584 0.636081857 0.076524583 1.712764277 10.076208975 0.000000056 0.000000001 0.039015099 0.000009757 0.530403598 0.000000612 0.000002396 0.904996219 0.000000038 0.539893331 0.113704909 0.626517288 0.001501465 0.000000017 1.622889271 0.000005075 5.190862717 0.000000056 0.000000001 0.031584266 0.244475786 0.000053984 0.000000017 0.000000083 0.000000609 0.230032886 0.000000001 0.000000001 0.102966064 0.000037426 2.037697063 0.000000203 1.376728907 16.614199569 25.526282994 0.000000056 0.000000001 0.105620558 0.000011882 0.000693083 0.000029886 0.604515914 0.187519916 0.000170659 0.056010335 0.769928257 0.000376266 0.221253885 0.659539194 2.190483714 2.502266939 6.128475924 0.673562474 22.501182643 0.001780550 0.113982000 0.073629700 0.066932600 0.065974100 0.082327200 0.077136100 0.073121300 0.077722800 0.075279500 0.076703900 0.082466200 0.059621100 0.032933600 0.010760500 0.008535740 0.005769330 0.004012100 0.005813250 0.005498360