Protein SDHAF2

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
YOL071W	pdb,2lm4,A,#1	55	152	3.43e-66	100
FBpp0303465	pdb,2lm4,A,#1	56	147	1.77e-25	50
ENSTRUP00000044302	pdb,2lm4,A,#1	57	153	2.55e-25	46.939
ENSGACP00000020568	pdb,2lm4,A,#1	57	150	1e-24	48.98
ENSPFOP00000004358	pdb,2lm4,A,#1	54	147	2.5e-24	47.959
ENSCHOP00000004615	pdb,2lm4,A,#1	57	150	2.77e-24	52.041
ENSTNIP00000003522	pdb,2lm4,A,#1	55	148	4.2e-24	46.939
ENSLACP00000007057	pdb,2lm4,A,#1	57	150	4.82e-24	48.98
ENSMUSP00000025570	pdb,2lm4,A,#1	55	148	5.5e-24	51.02
ENSONIP00000007816	pdb,2lm4,A,#1	57	147	6.48e-24	49.474
ENSNGAP00000009248	pdb,2lm4,A,#1	55	148	6.83e-24	51.02

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.082	0.181	0.737	0.203	0.262	0.535

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.532994923857868	0.304568527918782	0.0050761421319797	0	0	0	0.0050761421319797	0.152284263959391

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

2.547935886 0.000000080 2.796895639 0.000000033 0.178002807 4.045137085 0.000000033 0.439584636 0.747662514 4.334765545 0.000000033 0.059688653 0.177391555 1.117897086 0.063482271 0.000000033 0.002929122 0.200453567 0.846824338 5.039997036 5.907394430 0.000000033 0.000000523 0.000039370 0.080851375 0.737110492 7.949051806 0.271349792 0.000000033 0.000000002 0.000070871 0.002232826 0.062375105 0.982008994 0.391571851 10.062672761 0.000000033 0.000000005 0.054349612 0.112486276 0.002890772 0.027653591 0.049109610 0.718445883 6.300177087 0.000000033 0.000000056 0.004776404 0.000002033 0.000030314 0.057865607 0.089910455 0.015839111 0.300811011 7.152155506 0.000000033 0.000001717 0.000008082 0.052101375 0.000000021 0.399406980 0.003484384 0.030674718 0.022643155 0.320475267 3.749392011 0.000000033 0.000076508 0.000000001 0.000000001 0.000000016 0.001719359 0.000035374 0.000016998 0.007712519 0.015122184 0.130144643 5.483410752 0.000000033 0.000000001 0.000000001 0.000000001 0.008828861 0.000383553 0.002803519 0.000030134 0.000039239 0.328653017 0.000009899 0.000003784 8.681110437 0.000000033 0.000000018 0.000000108 0.630053355 0.000027747 0.005160187 0.000613770 0.334725346 0.000058717 0.000000003 0.000000197 0.002544956 0.000000039 21.033350297 0.000000033 0.000171828 0.000003901 0.000023084 0.000112489 5.867324457 1.893726856 0.002717129 0.000006678 0.000007166 0.001177865 2.294420472 0.000222016 14.388379083 105.662532054 0.000000033 0.000000001 0.000000001 0.000000001 0.000000001 0.000000011 0.000000006 0.000000035 0.000000150 0.002417495 0.692730163 0.000457609 0.010093556 4.459190814 0.044655889 0.118238163 0.000000033 0.000000170 0.000107073 6.144392571 0.000000988 0.000000598 7.056587199 0.000000694 0.000000005 0.000000108 0.000011573 9.801162980 0.000000085 0.009852452 0.000527640 0.009806132 113.475077311 0.000000033 0.000000001 0.000000001 0.000000001 0.000000001 0.000000011 0.000000001 0.000702555 2.055120519 0.392997833 0.000014700 0.001384698 0.000000043 0.000003017 0.000000155 0.000000847 0.000115903 0.000012190 0.000000033 0.000000001 0.000000001 0.000000001 0.000000001 0.000000056 0.000000001 0.000816692 1.314507304 0.003453158 0.000004613 0.000000288 0.000000090 4.908354273 5.781848215 0.005116923 19.170778934 0.000002616 109.689320882 0.003072020 0.096599600 0.084706400 0.077968000 0.091756800 0.075343200 0.084013700 0.062116300 0.067989200 0.061178200 0.090256500 0.091471900 0.066067700 0.025151200 0.005315290 0.002408850 0.005319450 0.000747985 0.003537090 0.004980570