Protein SDHB

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
ENSMGAP00000000270	pdb,1yq4,B,#1	44	285	0	99.587
ENSMGAP00000000270	pdb,2h88,B,#1	46	284	0	99.582
ENSMGAP00000000270	pdb,2h88,O,#1	46	284	0	99.582
ENSMGAP00000000270	pdb,2fbw,B,#1	46	284	0	99.582
ENSCANP00000029176	pdb,3sfe,B,#1	36	275	0	97.917
ENSMGAP00000000270	pdb,2h89,B,#1	46	285	0	99.583
ENSMGAP00000000270	pdb,1yq3,B,#1	44	285	0	99.587
ENSCANP00000029176	pdb,3ae4,B,#1	37	275	1.68e-180	97.908
ENSCANP00000029176	pdb,3ae2,B,#1	37	275	1.68e-180	97.908
ENSCANP00000029176	pdb,3ae7,B,#1	37	275	1.68e-180	97.908
ENSCANP00000029176	pdb,3aea,B,#1	37	275	1.68e-180	97.908

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.197	0.25	0.553	0.16	0.332	0.508

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.436928702010969	0.0639853747714808	0.00914076782449726	0.0109689213893967	0.00548446069469835	0.00182815356489945	0.00914076782449726	0.462522851919561

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

1.017837815 0.054990330 0.887496672 0.000000006 0.265859136 1.670120367 0.159472791 0.407092940 0.926398631 2.046526530 0.000000006 0.297548268 0.859556033 1.620871424 2.984540008 0.185745125 0.577890205 1.195868232 1.656803629 2.777356277 4.789906456 0.000000006 0.014701245 0.309578680 0.591520804 0.653903954 5.701692475 2.791505913 0.000000006 0.000072184 0.087854865 0.227756443 1.087287090 3.365285011 1.782882435 3.787185497 0.000000006 0.079678763 0.152642609 0.403363059 0.414317855 1.764358213 1.457260001 4.197683131 3.759850610 0.000000535 0.000488058 0.100043064 0.185338914 0.596372534 1.310637582 0.578830268 1.556201602 2.633142429 5.141205252 0.000000006 0.035834719 0.000231973 0.009870092 0.572849885 0.986761379 0.549354225 1.987705538 1.933024448 4.688308710 5.763975320 0.000000006 0.000000001 0.000343477 0.000008684 0.019703465 0.377242525 0.580752733 0.124197025 0.004225445 1.111364462 3.939219765 7.687980996 0.000000006 0.000270623 0.000052582 0.000000001 0.493435777 0.430064967 0.032300436 0.019798035 0.461626571 1.568960838 0.207230005 2.760959760 5.673328026 0.000000006 0.000000001 0.000000001 0.000000001 0.078315304 0.000000119 0.001101241 0.000000006 0.637778837 0.000079011 0.301708187 0.218804680 1.046547259 8.138185552 0.000000006 0.000000001 0.000000001 0.000000001 0.000000009 0.226760499 0.218027514 0.000005399 0.000184863 1.225915025 0.742954033 0.000460602 1.257151502 4.796153534 4.094510908 0.000000006 0.000000001 0.000000005 0.023764678 0.000000012 0.000000150 0.000000092 0.000000346 0.988992632 1.018468684 0.006264870 2.569348704 1.123756226 0.436819370 6.814396979 0.000006988 0.000000006 0.003932371 0.215974401 0.000000001 0.004818991 0.000014430 0.000000130 0.000000002 0.000000002 0.140119455 0.000001775 0.403190137 1.294373000 3.244515389 1.015985304 0.000000009 6.376622222 0.000000006 0.000000001 0.000000001 0.000000001 0.000000001 0.000000002 0.000000001 0.000000002 0.000000495 0.033992470 0.000000219 0.724678581 3.228159246 0.000004403 0.000000005 0.000000009 5.734549657 1.491884728 0.000000006 0.000000001 0.007601270 0.009372544 0.000001088 0.003614118 0.258170476 0.533091644 0.377757116 0.081595918 0.991716609 1.925068664 1.820420110 3.799021784 0.000000043 1.011028123 13.741247343 4.873632192 8.771469000 0.016907900 0.199043000 0.085222600 0.069603300 0.068538200 0.063616900 0.076048200 0.056187900 0.063993500 0.052321000 0.045235100 0.046349100 0.046602100 0.025904300 0.021557300 0.011407200 0.003711730 0.015014900 0.008459290 0.024277000