Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSACAP00000006204pdb,1bj4,A,#141499062.955
ENSAMXP00000017649pdb,1bj4,A,#142499061.884
ENSDARP00000135871pdb,1bj4,A,#135488060.48
ENSOANP00000015661pdb,1bj4,A,#111481088.11
ENSTNIP00000014966pdb,1bj4,A,#140497063.519
ENSRROP00000003271pdb,1bj4,A,#18411071.762
ENSPMAP00000006799pdb,1bj4,A,#143501064.882
ENSCJAP00000013915pdb,1bj4,A,#192509064.133
ENSMLEP00000025931pdb,1bj4,A,#111429076.596
ENSLACP00000011159pdb,1bj4,A,#130471079.195
ENSXETP00000062724pdb,1bj4,A,#135495063.753

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.0690.2540.6770.0360.3090.655

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.4723163841807910.07796610169491530.009039548022598870.01920903954802260.004519774011299440.003389830508474580.002259887005649720.411299435028249

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)