Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSMICP00000024364pdb,2lck,A,#1142792.15e-5137.993
ENSOGAP00000003263pdb,2lck,A,#1142794.65e-5137.993
ENSPPYP00000009816pdb,2lck,A,#1142796.22e-5137.634
ENSODEP00000011478pdb,2lck,A,#1142796.56e-5138.351
MGP_PahariEiJ_P0038269pdb,2lck,A,#1132783.81e-5036.201
ENSTGUP00000003569pdb,2lck,A,#1132763.48e-4936.331
ENSFCAP00000011996pdb,2lck,A,#1142799.58e-4936.559
ENSNGAP00000026753pdb,2lck,A,#1132789.6e-4935.842
ENSDARP00000098538pdb,2lck,A,#1132771.52e-4836.691
ENSTNIP00000015325pdb,2lck,A,#1132786.06e-4836.655
ENSJJAP00000014067pdb,2lck,A,#1122797.28e-4835.943

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.1610.2270.6120.2190.5480.233

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.2612163509471590.02293120638085740.0009970089730807580.009970089730807580.007976071784646060.01595214356929210.01595214356929210.665004985044865

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)