Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSXETP00000036148pdb,4p60,A,#1572951.15e-13575.732
ENSPTRP00000033227pdb,4p60,A,#1582962.93e-13574.895
ENSSARP00000008386pdb,4p60,A,#1532913.27e-13575.314
ENSEEUP00000013439pdb,4p60,A,#1582964.05e-13574.895
ENSCHOP00000004764pdb,4p60,A,#1582961.27e-13474.477
ENSTSYP00000010761pdb,4p60,A,#1452831.87e-13474.477
ENSACAP00000014392pdb,4p60,A,#1623009.05e-13373.222
ENSLACP00000004983pdb,4p60,A,#1623002.39e-13174.895
ENSPCAP00000009709pdb,4p60,A,#1582953.87e-13173.64
ENSLOCP00000013492pdb,4p60,A,#1572962.63e-13074.167
ENSAMXP00000014956pdb,4p60,A,#1582947.19e-13075.105

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.0420.1290.8290.3850.3350.28

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.7031055900621120.1254658385093170.006211180124223600.0062111801242236000.159006211180124

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)