Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSGALP00000059140pdb,2lck,A,#192877.07e-6638.246
ENSCAFP00000034105pdb,2lck,A,#1633416.62e-6537.762
ENSSHAP00000019097pdb,2lck,A,#1182968.14e-6336.842
ENSTSYP00000006838pdb,2lck,A,#1413271.08e-5134.014
ENSODEP00000016965pdb,2lck,A,#1443113.45e-5134.783
ENSHGLP00000025514pdb,2lck,A,#1612722.86e-5039.631
ENSGGOP00000027007pdb,2lck,A,#1723341.77e-4332.593
ENSVPAP00000006314pdb,2lck,A,#1413167.78e-3931.449
ENSTBEP00000012979pdb,2lck,A,#11073371.63e-3834.31
ENSETEP00000008257pdb,2lck,A,#1223178.4e-3728.053
ENSMMUP00000060115pdb,2lck,A,#1392837.78e-3630.435

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.0870.3850.5280.6120.2220.166

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.4093178036605660.1247920133111480.01830282861896840.02329450915141430.003327787021630620.0648918469217970.272878535773710.0831946755407654

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)