Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSMAUP00000024898pdb,2lck,A,#1102733.4e-1926.689
MGP_CAROLIEiJ_P0075115pdb,2lck,A,#162746.07e-1825.581
ENSCGRP00000021379pdb,2lck,A,#162749.9e-1825.987
ENSCLAP00000005569pdb,2lck,A,#182741.08e-1626.846
ENSACAP00000002361pdb,2lck,A,#182671.33e-1625.172
ENSTSYP00000025056pdb,2lck,A,#162741.59e-1624.917
ENSLAFP00000011433pdb,2lck,A,#162741.59e-1626.159
ENSDORP00000023910pdb,2lck,A,#162741.86e-1625.249
ENSHGLP00100002409pdb,2lck,A,#162662.07e-1626.117
ENSMLUP00000002434pdb,2lck,A,#162743.98e-1625.828
ENSTGUP00000009892pdb,2lck,A,#1142676.91e-1625

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.0990.2360.6650.2120.4450.343

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.555304740406320.06094808126410840000.0022573363431151200.381489841986456

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)