Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
FBpp0073280pdb,1okc,A,#1203085.49e-17981.379
FBpp0073280pdb,2c3e,A,#1203085.63e-17981.379
ENSCINP00000032502pdb,2c3e,A,#152931.08e-16979.31
ENSCINP00000032502pdb,1okc,A,#152931.5e-16979.31
ENSCINP00000030061pdb,1okc,A,#162957.29e-16777.32
ENSCINP00000030061pdb,2c3e,A,#162958.53e-16777.32
ENSLACP00000019158pdb,2c3e,A,#1213075.57e-16575.779
ENSLACP00000019158pdb,1okc,A,#1213075.86e-16575.779
ENSCSAVP00000005783pdb,2c3e,A,#182944.64e-16176.389
ENSCSAVP00000005783pdb,1okc,A,#182949.63e-16176.389
MGP_CAROLIEiJ_P0057464pdb,1okc,A,#1193059.01e-16074.048

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.1670.3010.5320.1410.6030.255

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.7918918918918920.0729729729729730.008108108108108110.005405405405405410000.121621621621622

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)