Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
FBpp0291674pdb,2lck,A,#1313089.83e-2828.819
ENSGALP00000058542pdb,2c3e,A,#1303107e-2426.78
ENSGALP00000058542pdb,1okc,A,#1303107.1e-2426.78
ENSACAP00000009246pdb,1okc,A,#1433201.4e-2328.094
ENSACAP00000009246pdb,2c3e,A,#1433201.52e-2328.094
ENSCPOP00000025519pdb,1okc,A,#1242871.6e-2329.286
ENSCPOP00000025519pdb,2c3e,A,#1242871.68e-2329.286
ENSJJAP00000001162pdb,1okc,A,#1242884.32e-2329.537
ENSJJAP00000001162pdb,2c3e,A,#1242885.22e-2329.537
ENSMOCP00000015474pdb,1okc,A,#1253043.22e-2228.041
ENSMOCP00000015474pdb,2c3e,A,#1253043.37e-2228.041

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.0630.2250.7120.1020.4540.444

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.4881889763779530.1141732283464570.04527559055118110.0059055118110236200.001968503937007870.001968503937007870.34251968503937

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)