Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSOCUP00000010383pdb,4p60,A,#1572955.96e-17399.163
ENSPCAP00000008145pdb,4p60,A,#1572951.14e-17197.908
ENSETEP00000002401pdb,4p60,A,#1572951.25e-17097.49
ENSPSIP00000016028pdb,4p60,A,#1572952.93e-16190.377
ENSACAP00000016064pdb,4p60,A,#1242623.94e-16190.795
ENSOANP00000013658pdb,4p60,A,#1442821.13e-15891.213
ENSXETP00000040790pdb,4p60,A,#1542925.39e-15486.611
ENSAPLP00000002324pdb,4p60,A,#1542921.02e-15286.192
ENSLACP00000007565pdb,4p60,A,#1572953.42e-15286.192
ENSTGUP00000008583pdb,4p60,A,#1572951.64e-14984.519
ENSLOCP00000009318pdb,4p60,A,#1823202.85e-14984.519

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.0990.2880.6130.0150.5210.464

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.1292200232828870.1868451688009310.04831199068684520.0395809080325960.02270081490104770.009313154831199070.005820721769499420.558207217694994

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)