Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSAMXP00000000139pdb,2c3e,A,#12294089.078
ENSONIP00000003538pdb,1okc,A,#117308089.726
ENSCJAP00000044268pdb,2c3e,A,#12294083.276
ENSCJAP00000044782pdb,1okc,A,#13294090.068
ENSXETP00000054277pdb,1okc,A,#13294088.356
ENSCJAP00000044782pdb,2c3e,A,#12294089.761
ENSAMXP00000000139pdb,1okc,A,#13294089.041
ENSETEP00000010557pdb,2c3e,A,#12294084.983
ENSBTAP00000055370pdb,1okc,A,#13294089.726
ENSACAP00000012600pdb,1okc,A,#13293087.329
ENSETEP00000010557pdb,1okc,A,#13294085.274

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.1110.3050.5840.1780.3560.466

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.4340175953079180.002932551319648090.001466275659824050.002932551319648090.001466275659824050.002932551319648090.004398826979472140.549853372434018

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)