Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSAMXP00000026655pdb,2lck,A,#1543151.69e-1426.573
ENSGMOP00000015470pdb,2lck,A,#132682.97e-1425.517
ENSPFOP00000020174pdb,2lck,A,#1463072.63e-1325.532
ENSTRUP00000024481pdb,2lck,A,#1212824.25e-1324.823
ENSLOCP00000022025pdb,2lck,A,#162674.78e-1324.113
ENSDARP00000131320pdb,2lck,A,#1422994.84e-1225.09
ENSONIP00000026670pdb,2lck,A,#1423061.44e-1124.567
ENSXETP00000004777pdb,2lck,A,#1492991.59e-1023.913
ENSSHAP00000020211pdb,2lck,A,#1752775e-1026.009
ENSACAP00000011869pdb,2lck,A,#1413011.78e-0923.759
ENSDARP00000073071pdb,2lck,A,#1202821.91e-0923.776

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.0860.0780.8360.1140.5470.339

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.4204322200392930.1748526522593320.0314341846758350.01178781925343810.001964636542239690.005893909626719060.009823182711198430.343811394891945

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)