Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSONIP00000006522pdb,1okc,A,#13294089.041
ENSCJAP00000009899pdb,2c3e,A,#15295083.562
ENSLACP00000007842pdb,1okc,A,#13294091.438
ENSGMOP00000003864pdb,2c3e,A,#13294086.301
ENSDARP00000143473pdb,2c3e,A,#13295082.935
ENSACAP00000012600pdb,2c3e,A,#12293087.031
ENSDARP00000137238pdb,2c3e,A,#12294090.785
ENSSBOP00000003500pdb,1okc,A,#13294084.247
ENSONIP00000003538pdb,2c3e,A,#116308089.761
ENSMEUP00000007769pdb,2c3e,A,#12294087.713
ENSSARP00000012361pdb,1okc,A,#13292090.068

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.1330.4650.4020.0930.1320.776

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.261732851985560.00722021660649820.001805054151624550.004512635379061370.004512635379061370.002707581227436820.00361010830324910.713898916967509

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)