Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
C42C1.10dpdb,2lck,A,#1212393.21e-1528.194
C42C1.10dpdb,2lck,A,#1211996.83e-1426.111
C42C1.10dpdb,1okc,A,#1212431.72e-1324.895
C42C1.10dpdb,2c3e,A,#1212431.72e-1324.895
C42C1.10dpdb,2c3e,A,#11142663.02e-0824.852
C42C1.10dpdb,1okc,A,#11142663.19e-0824.852

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.0910.210.6990.2530.4710.277

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.4746192893401020.08756345177664970.00888324873096447000.0012690355329949200.427664974619289

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)