Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
FBpp0081367pdb,1hd0,A,#111851.69e-1536
FBpp0081367pdb,1hd1,A,#111851.69e-1536
FBpp0076923pdb,3s7r,B,#116903.52e-1534.667
FBpp0076923pdb,3s7r,A,#116904.12e-1534.667
FBpp0081367pdb,3s7r,B,#111851.85e-1436
FBpp0081367pdb,3s7r,A,#111852.07e-1436
FBpp0076923pdb,1hd0,A,#116909.87e-1432
FBpp0076923pdb,1hd1,A,#116909.87e-1432
FBpp0081367pdb,2mpu,A,#18851.11e-1336.709
FBpp0081367pdb,4c7q,A,#14851.26e-1334.94
FBpp0081367pdb,2cqd,A,#111852.16e-1340

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.070.0760.85400.0640.936

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.1805555555555560.1979166666666670.003472222222222220.00694444444444444000.02430555555555560.586805555555556

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)