Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSLACP00000015937pdb,2w8t,A,#11385028.1e-5032.425
ENSFDAP00000001947pdb,2xbn,A,#11355231.73e-4931.969
ENSFDAP00000001947pdb,2w8t,A,#11355236.31e-4931.714
ENSLACP00000015937pdb,2xbn,A,#11385026.79e-4932.425
ENSSSCP00000007534pdb,2bwo,D,#11445178.09e-4930.585
ENSSSCP00000007534pdb,2bwp,E,#11445178.81e-4930.585
ENSSSCP00000007534pdb,2bwp,A,#11445178.81e-4930.585
ENSSSCP00000007534pdb,2bwp,D,#11445178.81e-4930.585
ENSSSCP00000007534pdb,2bwp,B,#11445179.71e-4930.585
ENSSSCP00000007534pdb,2bwo,B,#11445171.02e-4830.585
ENSSSCP00000007534pdb,2bwo,E,#11445171.02e-4830.585

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.0380.1420.820.0880.5910.321

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.6526315789473680.1338345864661650.051127819548872200.001503759398496240.01954887218045110.003007518796992480.138345864661654

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)