Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
MGP_SPRETEiJ_P0056378pdb,3h8l,B,#1453441.05e-1524.695
MGP_SPRETEiJ_P0056378pdb,3h8i,A,#1453441.05e-1524.695
MGP_SPRETEiJ_P0056378pdb,3h8l,A,#1453441.05e-1524.695
MGP_SPRETEiJ_P0056378pdb,3h8i,B,#1453441.05e-1524.695
FBpp0073081pdb,3hyv,A,#1573441.85e-1525.249
FBpp0073081pdb,3hyx,D,#1573441.85e-1525.249
FBpp0073081pdb,3hyv,B,#1573441.85e-1525.249
FBpp0073081pdb,3hyx,A,#1573441.85e-1525.249
FBpp0073081pdb,3hyv,D,#1573441.85e-1525.249
FBpp0073081pdb,3hyv,E,#1573441.85e-1525.249
FBpp0073081pdb,3hyx,C,#1573441.85e-1525.249

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.0660.1060.8280.1320.6070.261

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.5145038167938930.160305343511450.0045801526717557300000.320610687022901

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)