Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSCCAP00000037411pdb,3tqy,B,#1251325.31e-2240.741
ENSCCAP00000037411pdb,3tqy,A,#1251325.45e-2240.741
ENSCCAP00000037411pdb,3tqy,C,#1251325.57e-2240.741
ENSANAP00000007592pdb,3tqy,B,#1281352.52e-2140.741
ENSANAP00000007592pdb,3tqy,A,#1281352.59e-2140.741
ENSANAP00000007592pdb,3tqy,C,#1281352.59e-2140.741
ENSSBOP00000030254pdb,3tqy,B,#1281353.13e-2138.889
ENSGALP00000020973pdb,3tqy,C,#1291363.14e-2140.741
ENSSBOP00000030254pdb,3tqy,A,#1281353.22e-2138.889
ENSSBOP00000030254pdb,3tqy,C,#1281353.22e-2138.889
ENSGALP00000020973pdb,3tqy,B,#1291363.26e-2140.741

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.010.020.970.0120.4090.578

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.4052863436123350.2334801762114540.0044052863436123400000.356828193832599

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)