Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSPPAP00000030554pdb,2fpg,B,#132423093.112
ENSDARP00000107576pdb,2fpg,B,#138429085.459
ENSONIP00000025646pdb,1eud,B,#18402084.051
ENSMFAP00000041696pdb,2fp4,B,#138451091.546
ENSOGAP00000005527pdb,2fpi,B,#13290095.486
ENSPPAP00000030554pdb,1eud,B,#131425092.152
ENSTBEP00000005658pdb,1eud,B,#137426094.177
ENSDORP00000017432pdb,2fpp,B,#138400088.041
ENSSARP00000004456pdb,2fp4,B,#110401075.51
ENSCATP00000004709pdb,1euc,B,#137417091.339
ENSRBIP00000006674pdb,1eud,B,#137415086.076

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.030.0940.8750.1250.6840.191

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.29049531459170.2824631860776440.02409638554216870.01472556894243640.004016064257028110.0026773761713520700.381526104417671

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)