Protein TFAM

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
ENSPPAP00000014082	pdb,3tq6,A,#1	44	231	1.6e-133	96.392
ENSPPAP00000014082	pdb,4nnu,A,#1	44	230	7.24e-133	96.373
ENSPPAP00000014082	pdb,4nnu,B,#1	44	229	2.97e-132	96.354
ENSPPAP00000014082	pdb,3tq6,B,#1	44	227	1.08e-130	96.316
ENSPPAP00000014082	pdb,4nod,A,#1	44	227	1.08e-130	96.316
ENSPPAP00000014082	pdb,4nod,G,#1	44	227	1.08e-130	96.316
ENSCANP00000010381	pdb,3tq6,A,#1	44	237	2.29e-128	91.237
ENSCANP00000010381	pdb,4nnu,A,#1	44	236	2.46e-128	91.71
ENSCANP00000010381	pdb,4nnu,B,#1	44	235	9.05e-128	91.667
ENSCSAP00000003557	pdb,3tq6,A,#1	44	237	4.81e-126	90.206
ENSCANP00000010381	pdb,3tq6,B,#1	44	233	4.82e-126	91.579

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.009	0.029	0.962	0.018	0.558	0.424

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.356060606060606	0.257575757575758	0.0126262626262626	0.0202020202020202	0.0176767676767677	0.0176767676767677	0.0101010101010101	0.308080808080808

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

3.228820891 0.000000172 4.725155600 0.000000172 0.010670005 9.488762909 0.000000172 0.100392580 0.291526608 10.724534101 1.470979873 0.264559840 0.199143654 0.589355157 1.684234106 0.000000172 0.001225046 0.497398976 0.742133033 8.635546710 6.006710869 0.000000172 0.031775109 0.002846389 0.311558305 0.452411107 8.272949466 0.924285883 0.000000172 0.000000008 0.000007497 0.083270855 0.173753091 1.373598011 0.145283087 6.006543604 0.000000172 0.000000448 0.185551219 0.010783182 0.161696089 0.403107802 0.509672536 0.251074773 5.858387983 0.000000172 0.000000286 0.000000004 0.000022369 0.078055950 0.473098560 0.007825447 0.350570832 0.254346137 5.119598129 0.000000172 0.011724673 0.001047105 0.067919496 0.061692298 0.320754747 0.097746642 0.093748362 0.291118555 0.148861098 3.706850148 0.000000172 0.020670020 0.006856381 0.000000762 0.057554516 0.061125423 0.000002765 0.035684410 0.159063819 0.229772665 0.369884743 3.139325397 0.000000172 0.000000002 0.000000002 0.000000002 0.001289702 0.633764946 0.003563555 0.000000042 0.013386660 0.079250929 0.062865688 0.008082657 4.851114538 0.000000172 0.000000002 0.000000004 0.000006243 0.037140445 0.070561536 0.813112935 0.000000001 0.000000392 0.118746405 0.282569275 0.745612840 0.048063713 6.480949010 0.000000172 0.085717829 0.000000002 0.000000002 0.000329747 0.302998638 1.179157256 0.000330796 0.000000015 0.178379361 0.043004820 0.000063348 0.779381855 2.035252047 3.565831368 0.000000172 0.000005044 0.002698550 0.000053265 0.802638131 1.167525383 0.001429058 0.000000001 0.524664479 0.000000001 0.000000740 0.407857149 0.665154375 0.285910073 0.266078344 1.809583485 0.000000172 0.000000002 0.000000902 0.000462085 0.000061191 0.000000052 0.909475267 0.000000001 0.000000064 0.168508725 1.021048490 0.000066031 0.000000006 0.786926610 0.000048740 2.880305108 5.418257338 0.000000172 0.000000002 0.000000002 0.000000078 0.928589522 0.760049398 0.108583616 0.023269307 0.000263853 0.000471786 0.001839785 0.613348102 0.219728456 0.923157073 4.067660018 0.000230696 2.494970748 21.319115486 0.000000172 0.000000002 0.000000002 0.000000002 0.000091619 0.408974982 0.000000215 0.000009540 0.291748171 0.000011098 0.852374438 0.335204165 0.773955289 1.503766632 1.602455983 0.000000010 2.988362375 0.000000026 22.001591495 0.000580218 0.065311500 0.050960700 0.042815100 0.058033500 0.062108200 0.058397300 0.072131500 0.069883900 0.089700400 0.111837000 0.116009000 0.092729000 0.055089000 0.023241200 0.010134100 0.004762140 0.003892760 0.004875920 0.007507000