Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSSTOP00000029112pdb,3fyd,A,#1962442.61e-0728.289
ENSSTOP00000029112pdb,3gru,A,#1962442.61e-0728.289
ENSSTOP00000029112pdb,3grv,A,#1962442.71e-0728.289
ENSSTOP00000029112pdb,3fux,C,#11013412.72e-0725.306
ENSSTOP00000029112pdb,3fuu,A,#11013412.73e-0725.306
ENSSTOP00000029112pdb,3fuw,A,#11013412.73e-0725.306
ENSSTOP00000029112pdb,3fux,B,#11013412.91e-0725.306
ENSSTOP00000029112pdb,3fux,A,#11013412.91e-0725.306
ENSSTOP00000029112pdb,3fyc,A,#1962444.98e-0728.947
ENSSTOP00000029112pdb,3fyc,B,#1962444.98e-0728.947
ENSSTOP00000029112pdb,3fut,A,#11013416.75e-0725.306

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.0060.010.9840.0080.0790.913

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.4384920634920630.335317460317460.01984126984126980.007936507936507940.0079365079365079400.001984126984126980.188492063492063

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)