Protein TIMM13

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
YGR181W	pdb,3cjh,I,#1	46	99	1.54e-35	100
YGR181W	pdb,3cjh,A,#1	46	97	3.76e-34	100
YGR181W	pdb,3cjh,G,#1	46	97	3.76e-34	100
YGR181W	pdb,3cjh,K,#1	46	97	3.76e-34	100
YGR181W	pdb,3cjh,C,#1	46	97	3.76e-34	100
ENSLOCP00000005138	pdb,3cjh,C,#1	36	90	1.75e-11	40
ENSLOCP00000005138	pdb,3cjh,G,#1	36	90	1.75e-11	40
ENSLOCP00000005138	pdb,3cjh,A,#1	36	90	1.75e-11	40
ENSLOCP00000005138	pdb,3cjh,K,#1	36	90	1.75e-11	40
ENSLOCP00000005138	pdb,3cjh,I,#1	36	90	1.77e-11	40
ENSDARP00000075599	pdb,3cjh,I,#1	35	89	1.89e-11	40

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.204	0.334	0.462	0.332	0.362	0.306

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.231788079470199	0.076158940397351	0.0198675496688742	0.0298013245033113	0.00993377483443709	0.0198675496688742	0.033112582781457	0.579470198675497

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

8.013477154 0.024072164 1.839669995 0.000030496 0.377779986 4.788692346 0.000000075 0.000001388 0.713552676 6.619380607 0.000000831 0.000000001 0.289714393 0.000035750 0.009921719 0.000011489 0.032526325 0.049002978 1.137549926 5.774071298 7.695776388 0.037977039 0.000000043 0.000003188 0.017162204 1.559601750 4.027059097 0.163751558 1.682961113 0.000099383 0.000000008 0.000000595 0.000013479 1.056322996 0.028686643 5.181571938 0.000013096 0.000000001 0.000000003 0.000000123 0.000748707 0.000111570 0.696534574 0.546607574 5.061382877 0.000000030 0.000000001 0.129403760 0.000000384 0.080392858 0.000370304 0.278715028 0.272917934 0.057402927 6.383636193 0.000000214 0.112676492 0.000000003 0.000002207 0.047748514 0.000168220 0.281846623 0.103271994 0.006667213 0.001856479 3.050557307 0.000000030 0.000000001 0.000000001 0.369885662 0.284220670 0.092873860 0.000797253 0.646713620 0.000930191 0.150236427 0.584406812 5.255945086 0.000000030 0.000000001 0.000000001 0.000000105 0.139703970 0.000000050 0.000008230 0.620645151 0.000002257 0.000002683 1.321780222 0.000008859 6.221980837 0.000000030 0.000000001 0.000000001 0.000001207 2.381125380 0.000015134 0.004855669 0.000053485 0.000045539 0.000065022 0.713487804 0.461911331 0.726191438 17.176433720 0.000000030 0.000000001 0.000000001 0.000000276 0.003183419 0.000003545 0.000297619 0.000631255 0.000095756 0.000651458 0.393391362 0.005005358 5.786728819 0.499100930 76.308907097 0.000000030 0.000000001 0.000000001 0.000000002 0.000000082 0.000000009 0.000000567 0.000089375 0.000000721 0.000000005 0.000000001 0.000000001 1.814258847 0.000000003 0.000437135 25.845759712 0.000000030 0.000000001 0.000000001 0.000000002 0.000001919 0.000000123 0.000002213 1.387756276 0.891091492 0.000000005 0.000000001 0.000000001 0.412816908 0.000000003 0.000053208 0.003270991 178.088076858 0.000000030 0.000000001 0.000000001 0.000000682 3.050184708 0.000004594 0.000104428 0.043219156 0.088025627 0.757382480 0.000002763 0.000000212 0.772817105 0.000000581 7.168078794 0.248731287 0.092599790 61.069828892 0.003529367 1.801472865 0.000000876 0.000014708 0.001218797 0.140410005 6.682298930 0.019341265 0.003712230 2.084686583 1.290669384 0.000099388 0.000072540 0.000007831 17.277741092 0.384829225 0.000000022 0.000000016 0.000013890 0.003315240 0.069429300 0.068930300 0.047420600 0.052298800 0.061184600 0.064823200 0.097316800 0.097616800 0.089414400 0.113851000 0.090978500 0.060668300 0.032867300 0.010752100 0.010226900 0.004492440 0.006206600 0.011971200 0.006235990