Protein TIMM44

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
YIL022W	pdb,2fxt,A,#1	234	425	2.64e-141	100
FBpp0083163	pdb,2fxt,A,#1	272	450	2.21e-30	34.783
ENSAMXP00000022240	pdb,2fxt,A,#1	293	471	1.81e-26	32.609
ENSTRUP00000000455	pdb,2fxt,A,#1	259	436	1.1e-25	33.333
ENSPFOP00000013608	pdb,2fxt,A,#1	270	449	2.15e-25	32.432
ENSCGRP00001026388	pdb,2fxt,A,#1	178	356	2.15e-25	33.696
ENSTNIP00000014015	pdb,2fxt,A,#1	260	437	3.4e-25	32.24
ENSLOCP00000005309	pdb,2fxt,A,#1	264	441	6.12e-25	32.24
ENSGACP00000013627	pdb,2fxt,A,#1	268	446	8.07e-25	32.065
ENSCGRP00000002634	pdb,2fxt,A,#1	265	443	1.15e-24	33.696
ENSDARP00000138201	pdb,2fxt,A,#1	265	443	1.6e-24	31.522

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.067	0.124	0.809	0.052	0.434	0.514

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.580530973451327	0.176991150442478	0.00884955752212389	0.00530973451327434	0.00176991150442478	0.00176991150442478	0.00353982300884956	0.221238938053097

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

6.794553213 0.000000090 3.457339459 0.067248727 0.000195653 7.619414978 0.000011576 0.052908482 0.069691667 7.616486575 0.000000090 0.168969905 0.141549431 0.173979082 0.614903885 0.000000090 0.176913410 0.162522774 0.238147765 6.562161643 6.171397786 0.000000090 0.034842034 0.180350049 0.027607087 0.274162475 8.171042211 0.107976071 0.000000090 0.041695146 0.000002175 0.016620128 0.269171799 0.391205452 0.362293657 8.405930705 0.000000090 0.007294840 0.000278017 0.147404319 0.116471975 0.058903214 0.091350461 0.001334539 5.989234219 0.240733470 0.016927089 0.000000086 0.000000001 0.007203461 0.027373003 0.147928272 0.050459113 0.000001238 4.568925115 0.000000090 0.000000001 0.000000001 0.000000001 0.004590233 0.000002980 0.102069402 0.092571791 0.008191425 0.000000033 4.241550020 0.000000090 0.026601701 0.000000001 0.000000001 0.070181825 0.055994289 0.106521629 0.000000001 0.000000435 0.021320768 0.000000011 5.339042165 0.000000090 0.000000001 0.000000001 0.000000001 0.000000069 0.000007100 0.247612885 0.000000001 0.000000001 0.000000001 0.016219056 0.000000001 7.839436958 0.000000090 0.000009198 0.000064570 0.000000565 0.147665701 0.942166312 3.566040681 0.011641449 4.855057329 0.000000084 0.010311180 0.000000019 0.000000038 54.388365709 0.000000090 0.000000001 0.000000001 0.000000001 0.025167299 0.220058724 0.000354204 0.002631915 0.003270966 0.000047248 0.000284092 0.000000001 0.000118656 1.240305433 726.693987537 0.000000090 0.000000001 0.000000001 0.000000001 0.000011132 2.533997791 0.000000086 0.000000002 0.000003981 1.913771438 0.000000001 0.000000001 0.000000002 1.947480506 0.005542931 261.629760980 0.000000090 0.000000001 0.000000001 0.000000001 0.000000001 0.000000002 0.000000001 0.120941980 0.000000001 0.000004796 0.627152204 0.000027226 5.970846524 0.000001770 0.000000237 266.473730379 0.003342610 0.000000090 0.823837927 0.000000001 0.000000001 0.004016745 0.000000007 0.000000001 4.150178497 0.000008000 0.118870210 1.962685092 0.000004542 0.861999775 12.602168474 0.004693114 0.807605649 198.109573509 263.883320458 0.000000090 0.000000551 0.000000001 0.000000061 0.189407876 1.717975379 3.967940243 0.000923480 0.000073649 0.131960152 2.408977651 0.121324669 0.124145756 23.213681304 5.672735892 0.404909002 1.360569236 0.585313359 519.951735917 0.001115520 0.089041300 0.076349300 0.069261200 0.087463100 0.092807500 0.096738100 0.071485600 0.076130100 0.088335000 0.094594900 0.086158900 0.052528900 0.012349700 0.000801585 0.000956447 0.001375880 0.001022630 0.000981268 0.000502978