Protein TIMM50

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
YPL063W	pdb,2hhl,C,#1	182	333	7.92e-27	37.288
YPL063W	pdb,2hhl,D,#1	193	333	8.19e-27	38.854
YPL063W	pdb,2hhl,B,#1	182	331	1.08e-26	37.714
YPL063W	pdb,2hhl,A,#1	182	331	1.15e-26	37.714
YPL063W	pdb,2q5e,A,#1	189	331	2.3e-26	36.478
YPL063W	pdb,2q5e,E,#1	189	331	2.43e-26	36.478
YPL063W	pdb,2ghq,A,#1	192	342	2.8e-25	35.928
YPL063W	pdb,2ght,B,#1	192	342	2.8e-25	35.928
YPL063W	pdb,2ght,A,#1	192	342	2.8e-25	35.928
YPL063W	pdb,1ta0,A,#1	192	342	3.62e-25	35.928
YPL063W	pdb,3pgl,A,#1	192	342	4.05e-25	35.928

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.049	0.072	0.879	0.072	0.425	0.503

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.284563758389262	0.173154362416107	0.0161073825503356	0.0456375838926174	0.0228187919463087	0.0161073825503356	0.0228187919463087	0.418791946308725

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

0.130678744 5.817382397 2.063566697 22.507107423 0.001327607 7.518595029 101.809755106 0.082752807 0.024645787 6.082015014 21.088653829 0.038183181 0.376514616 0.152049163 0.011737353 48.905207506 0.429767636 0.203863144 0.436674769 4.096045083 4.126492019 137.542155362 0.002968774 0.000584771 0.136006355 0.294400061 6.366782377 0.064939883 19.055182760 0.002922269 0.293174018 0.095224598 0.285715061 0.288296581 0.208026639 6.653759553 37.803470648 0.004670401 0.217291704 0.001026291 0.066072066 0.176409309 0.692614376 0.032946934 5.133178438 25.282359396 0.001487728 0.089032329 0.001894066 0.119747318 0.217384893 0.139935052 0.236945289 0.096638306 5.169908322 2.561081633 0.020907285 0.000020990 0.000000116 0.000179626 0.216251571 0.152578842 0.010223737 0.197890616 0.024912238 4.910090670 18.358674509 0.013796811 0.006029026 0.000176092 0.149148118 0.004143177 0.013514702 0.162873930 0.002660052 0.095780148 0.205577654 6.601918086 1.299263744 0.051315836 0.150101870 0.164707279 0.001956418 0.000144643 0.368010011 0.000000671 0.000037593 0.371791534 0.000695702 0.223523376 16.507073300 0.832587102 0.000000003 0.017016342 0.000004507 0.000000008 0.924041285 0.000191677 0.000000185 0.000311250 0.000734594 0.000000975 0.000004714 0.266850841 60.049589104 1838.050513538 0.000012274 0.246038230 2.328915932 2.165511516 0.018392752 0.039959912 7.616065624 2.522705787 0.342476529 0.016537389 0.001422685 8.960663607 3.221088949 81.170295882 6143.422228872 0.002285627 0.934022872 0.411719252 3.398626842 0.368931288 0.629841433 1.051000064 0.355877543 1.166190439 0.135252023 0.617155054 10.358124325 2.316374463 6.489049347 302.179055431 1.266295277 0.000000001 0.000000002 0.000000023 2.197473183 0.000000191 0.040626727 0.000740621 0.000019822 0.000000014 0.000000002 3.618312405 3.070065911 0.000001768 0.000000500 0.001865685 0.019365121 0.005827741 0.000000001 0.000000002 0.000000002 0.000000004 0.000000717 0.000000006 0.006077717 0.000173061 0.000080517 0.000000001 0.000000001 0.000007748 0.074245350 74.962825747 0.000019830 0.000038945 237.813590459 35.128125444 0.000000001 0.000000002 0.017730822 1.289558329 0.000048233 0.017766483 1.130599360 0.011116004 0.404610395 0.000000344 0.000000001 0.000000001 0.000000005 0.000000032 0.000022977 0.002690482 3.481041203 593.128743153 0.000002606 0.093366500 0.049327700 0.057718700 0.073713300 0.084089100 0.095738700 0.073680300 0.091287300 0.090643000 0.102570000 0.089860400 0.068956500 0.019883400 0.003174240 0.000993871 0.000245653 0.001028810 0.001641330 0.002078430