Protein TIMM8A

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
YJR135W-A	pdb,3cjh,B,#1	28	86	2.97e-37	100
YJR135W-A	pdb,3cjh,H,#1	29	86	1.33e-36	100
YJR135W-A	pdb,3cjh,L,#1	29	86	1.33e-36	100
YJR135W-A	pdb,3cjh,J,#1	29	85	8.58e-36	100
YJR135W-A	pdb,3cjh,F,#1	29	85	8.58e-36	100
YJR135W-A	pdb,3cjh,D,#1	29	83	2.06e-34	100
MGP_PahariEiJ_P0085743	pdb,3cjh,B,#1	29	84	2.62e-12	47.368
MGP_PahariEiJ_P0085743	pdb,3cjh,H,#1	29	84	2.95e-12	47.368
MGP_PahariEiJ_P0085743	pdb,3cjh,L,#1	29	84	2.95e-12	47.368
ENSRNOP00000018486	pdb,3cjh,B,#1	29	84	9.47e-12	45.614
ENSRNOP00000018486	pdb,3cjh,L,#1	29	84	1.04e-11	45.614

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.096	0.201	0.703	0.11	0.547	0.343

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.242957746478873	0.0633802816901408	0.0352112676056338	0	0.00352112676056338	0.00704225352112676	0	0.647887323943662

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

1.145824644 0.007042388 3.017873889 1.268735043 0.000004020 4.531108857 1.622636765 0.136236965 0.059036484 9.130636956 0.000046522 0.000000119 0.019312998 0.260990263 0.177699554 0.249598128 0.159921618 0.000002683 1.082258410 12.107996595 7.485435415 0.000075298 0.036194555 0.059820020 0.009024524 0.126478113 7.856421640 0.490202955 0.000000181 0.008268094 0.161895224 0.529394943 0.251217835 0.798788355 0.495091320 7.279243665 0.000000030 0.000000001 0.000000003 0.014817976 0.121784940 0.000572260 0.528022564 0.334299077 6.086877454 0.000000030 0.034803975 0.000000001 0.141776252 0.006855269 0.462921411 0.016655832 0.001052594 0.095082602 5.680379200 0.000000030 0.000000002 0.000000001 0.000054568 0.000051356 0.126736531 0.047627774 0.009125605 0.166214708 0.021460812 3.547206997 0.000000030 0.022894254 0.000000001 0.002791741 0.047641752 0.000418046 0.393524092 0.009471329 0.371696601 0.129785223 0.196781533 4.553318663 0.000000030 0.001478970 0.000000001 0.000000002 0.000000002 0.050397671 0.000000727 0.124153009 0.264026999 0.429034457 0.089372716 0.213682051 8.636155948 0.000000030 0.000000001 0.000000001 0.000000002 0.000000002 0.000014926 0.241326145 0.329052705 0.000559757 0.330730497 0.711888449 0.000051957 0.047524464 12.255126874 0.000000030 0.000000001 0.000000001 0.000000024 0.000000002 0.000001314 0.000000053 0.001426209 0.001815128 0.870881014 0.001023709 0.000097602 0.000130375 0.053237357 33.911599474 0.000000123 0.408216110 0.000000008 0.000981637 0.000000046 0.000032418 0.000000042 1.876324994 0.003409655 1.774606666 0.000401890 0.659943103 0.001988864 2.176586378 0.004939460 75.516259323 0.000000030 0.000004162 0.000000001 0.000000101 0.000000002 0.000000458 0.000000002 0.790942471 0.001209682 0.022578780 2.036185546 0.165498989 0.000015775 0.046723990 0.000003478 0.011568476 104.067408842 0.000000030 0.000000001 0.000000001 0.000000120 0.000000004 0.000049246 0.000000003 1.586937003 0.543822232 1.045409513 0.034442076 0.003179929 0.000263770 0.906665832 0.003268881 0.376501061 6.562310025 318.539154798 0.000000030 0.000000001 0.000000001 0.000000002 0.000000002 0.000276569 0.000000012 0.585496429 0.840309822 0.088991920 0.021541227 0.766098688 0.001350352 0.000012123 2.339452686 0.955424624 0.001494487 3.304922926 49.267289115 0.003380430 0.071445000 0.070296700 0.043010800 0.041590200 0.049915600 0.046764100 0.074623000 0.080833400 0.110021000 0.118224000 0.100884000 0.068284200 0.055882000 0.026255500 0.006632810 0.005839590 0.005682190 0.002410910 0.018023700