Protein TOMM20

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
ENSONIP00000022833	pdb,1om2,A,#1	52	146	2.97e-50	95.789
ENSGMOP00000012484	pdb,1om2,A,#1	53	147	1.61e-49	94.737
ENSPPAP00000024543	pdb,1om2,A,#1	33	127	2.82e-49	93.684
ENSPFOP00000019556	pdb,1om2,A,#1	52	146	6.48e-47	88.421
ENSDARP00000139148	pdb,1om2,A,#1	52	146	3.82e-46	90.526
ENSHGLP00000005577	pdb,1om2,A,#1	34	128	8.53e-45	88.421
ENSHGLP00100015238	pdb,1om2,A,#1	26	120	9.18e-45	89.474
ENSGACP00000005701	pdb,1om2,A,#1	52	146	2.7e-44	86.316
ENSODEP00000014530	pdb,1om2,A,#1	39	133	1.61e-43	85.263
ENSONIP00000022833	pdb,3ax5,A,#1	60	127	3.85e-43	100
ENSONIP00000022833	pdb,2v1s,C,#1	60	127	3.85e-43	100

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.045	0.093	0.862	0.046	0.461	0.492

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.272727272727273	0.258181818181818	0.0218181818181818	0.0109090909090909	0	0	0	0.436363636363636

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

4.210519099 0.000116986 2.826968128 0.000000105 0.315892770 4.971107406 0.000000105 0.180174862 0.000228250 6.670013001 0.000005990 0.683180679 0.138762368 0.001375390 0.763687863 0.000019412 0.105597423 0.000095746 0.147138418 7.037416159 7.384919920 0.000000105 0.063405701 0.055953547 0.000091407 0.008262826 7.307692890 0.145336100 0.000000105 0.015186356 0.152397976 0.015037515 0.001341143 0.261511035 0.001096463 7.626846698 0.000000105 0.000000025 0.109148806 0.029762900 0.202040107 0.041720303 0.272288330 0.173568484 7.525272723 0.000000105 0.000000001 0.000000005 0.177923524 0.234540797 0.681359426 0.001266558 0.055673557 0.259669413 5.222893120 0.000000105 0.000000037 0.044262789 0.000022390 0.000086800 0.356551888 0.119524737 0.443724478 0.001933249 0.019147517 4.526670109 0.000000105 0.000000001 0.000836304 0.025178656 0.000000878 0.806716012 0.419133397 0.278261308 0.053779984 0.625097313 0.190814401 6.835479587 0.000000105 0.000000001 0.050008651 0.000000004 0.002511011 0.411408353 0.175842892 0.000000507 0.093237858 0.000057716 0.747501787 0.007301495 7.760092029 0.000000105 0.000000001 0.000067954 0.575901732 0.000012068 0.545130823 0.000005010 0.000000107 0.812683070 0.762491207 0.966290015 0.348049272 2.136177703 8.914369975 0.000080712 0.201711163 0.000000480 0.000000207 0.000000068 0.056580793 0.000697696 1.396167126 0.000000036 0.000000001 0.090819565 0.710300670 0.119618766 3.894495482 13.608272673 0.000000216 0.000000616 0.000703927 0.208176948 0.563170427 0.000000003 0.013537709 0.000000002 0.000000002 0.233575247 0.000000001 0.000000006 1.188619666 3.114061486 1.760343290 16.274325337 0.000000105 0.000000001 0.000000001 0.000000001 0.241958285 0.000000002 0.788835764 0.000000002 1.438656033 0.000000002 0.398035984 0.323276162 0.000281156 0.000000004 0.000000010 1.935495392 20.468876067 0.000000105 0.000000001 0.000000001 0.000076409 0.255342124 0.137156144 1.051195959 0.078845554 0.003741660 0.001215167 1.133797363 0.407823809 0.824817145 6.053536679 3.551145771 4.087013711 4.121464402 13.508722388 0.000000105 0.000000001 0.000000001 0.000000001 0.111928785 0.151406143 0.000000063 0.107922432 0.552377497 0.173658725 0.000025268 0.870411357 0.924486540 0.133078397 3.142538037 0.933927420 0.000000011 10.262337943 6.574677542 0.000948123 0.091306300 0.087271500 0.085765500 0.058712600 0.066077900 0.061532200 0.061515200 0.064763500 0.085292000 0.100712000 0.089007800 0.060676600 0.026516400 0.010207100 0.011479800 0.009184090 0.006303320 0.009882690 0.012845400