Protein TOP1MT

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
ENSTSYP00000000156	pdb,1seu,A,#1	42	601	0	71.429
ENSODEP00000018771	pdb,1t8i,A,#1	37	555	0	62.679
ENSGMOP00000019215	pdb,1seu,A,#1	172	626	0	85.934
ENSCGRP00001012165	pdb,1sc7,A,#1	37	593	0	65.591
ENSLOCP00000005446	pdb,1rrj,A,#1	195	759	0	89.558
ENSTNIP00000003658	pdb,1t8i,A,#1	187	751	0	88.142
ENSETEP00000001309	pdb,1rrj,A,#1	416	744	0	98.48
ENSTRUP00000001370	pdb,1k4t,A,#1	241	790	0	84.909
ENSMODP00000014530	pdb,1sc7,A,#1	1	545	0	65.53
ENSMGAP00000002807	pdb,1sc7,A,#1	65	630	0	75.795
ENSGACP00000013439	pdb,1seu,A,#1	168	730	0	76.637

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.053	0.171	0.776	0.027	0.406	0.567

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.30379746835443	0.0643918547055586	0.0385250412768299	0.0264171711612548	0.0104567969179967	0.00220143093010457	0.00495321959273528	0.54925701706109

Loading ...

Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

0.511790207 0.136515268 1.796214372 0.000105774 0.281687441 3.335963643 0.334677810 0.322255907 0.684682003 3.262373428 0.003788683 0.049106054 0.207924999 0.295281495 0.528013174 0.573760558 0.310209963 0.508923799 0.951759329 5.346270251 5.172636069 0.000000006 0.154422479 0.053372834 0.277563454 0.688537030 3.568794988 1.403021401 0.030025043 0.051997989 0.113882748 0.163446875 0.324312355 1.189263077 0.290380835 3.750932480 0.000028429 0.012013206 0.022146685 0.114793002 0.234288766 0.240417298 0.596444635 0.747161358 4.177677612 0.000092458 0.013927021 0.056754381 0.183003896 0.078133123 0.354646259 0.206254387 0.529661532 0.731094549 3.445402354 0.000000640 0.019384318 0.006078894 0.026502675 0.018182215 0.320489347 0.188030790 0.154122211 0.350267896 0.508825324 3.428803123 0.000000006 0.026788438 0.009392555 0.005012325 0.055028040 0.123007399 0.138275474 0.169045358 0.174801107 0.134906684 0.650749908 4.060703158 0.000000006 0.006507988 0.000153045 0.052595328 0.107620839 0.128459750 0.160936578 0.006566501 0.094074191 0.069508427 0.273436797 0.605587678 4.376432172 0.000000006 0.000000002 0.000038911 0.020056483 0.457797757 0.266599007 0.379656943 0.035323202 0.215558098 0.092148884 0.235993291 0.153191353 0.234806943 1.763390617 0.000000006 0.000000002 0.000000002 0.033727342 0.205693431 0.016102322 0.369773595 0.040089258 0.001056631 0.172662800 0.009620524 0.247456715 0.119673465 0.096291090 1.209076337 0.000000006 0.000000002 0.000000002 0.000000003 0.177535606 0.004628247 0.434519322 0.033845113 0.071690918 0.194644085 0.388326993 0.108768591 0.246822869 0.422612566 0.129727038 0.650118189 0.000000006 0.000000002 0.000000002 0.000000003 0.263583764 0.069819489 0.897576760 0.000000002 0.000000002 0.117844243 0.208262488 0.002067537 0.070535060 0.232734228 0.000000006 0.000000007 1.520140791 0.000000006 0.000000002 0.000000002 0.000000003 0.000118290 0.816606893 0.079212972 0.000001453 0.281175343 0.000001677 0.186368534 0.134912145 0.918709899 0.785590636 0.000000020 0.859785418 0.000000011 7.784454457 0.000000006 0.020114070 0.000000002 0.000000003 0.303420420 0.401324858 0.291806741 0.072617406 0.000005345 0.000543365 0.377353485 0.155113874 0.134487855 0.020401542 0.562591488 0.000000007 0.289912361 0.000000022 1.912918655 0.016931000 0.059472300 0.051071300 0.036471300 0.044936000 0.043748100 0.050003300 0.046113600 0.051736400 0.067357300 0.086690600 0.124524000 0.174560000 0.094680100 0.016969400 0.013579900 0.008727810 0.004596430 0.001752040 0.006078910