Protein TRMU

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
ENSMPUP00000002494	pdb,2det,A,#1	3	383	3.85e-97	41.86
ENSMPUP00000002494	pdb,2deu,B,#1	4	383	4.34e-97	41.969
ENSMPUP00000002494	pdb,2deu,A,#1	4	383	4.34e-97	41.969
ENSXETP00000050341	pdb,2det,A,#1	3	384	3.11e-96	42.01
ENSLOCP00000019800	pdb,2det,A,#1	5	383	3.66e-96	41.558
ENSCLAP00000025148	pdb,2det,A,#1	3	383	3.78e-96	41.86
ENSLOCP00000019800	pdb,2deu,B,#1	5	383	3.87e-96	41.558
ENSLOCP00000019800	pdb,2deu,A,#1	5	383	3.87e-96	41.558
ENSCLAP00000025148	pdb,2deu,A,#1	4	383	4.08e-96	41.969
ENSCLAP00000025148	pdb,2deu,B,#1	4	383	4.08e-96	41.969
ENSBTAP00000007346	pdb,2det,A,#1	3	383	5.17e-96	41.86

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.05	0.097	0.854	0.086	0.631	0.284

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.511075949367089	0.140822784810127	0.00474683544303797	0.00474683544303797	0.00316455696202532	0.00158227848101266	0	0.333860759493671

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

0.007596463 0.001070799 1.875784011 0.102143380 0.002052328 5.744358736 34.028893021 0.167362986 0.011662549 6.068371698 47.672076184 0.031883517 0.054920172 0.000000683 0.150092053 17.191206717 0.091914095 0.047698375 0.387707842 5.250221483 6.465144137 44.060800721 0.001677079 0.000019782 0.109369016 0.002547101 8.876084078 0.000611077 7.952730116 0.000323330 0.075512348 0.008944822 0.201595129 0.091499785 0.013632869 7.392387304 9.226431973 0.009875015 0.011094101 0.000000001 0.159810064 0.148345102 0.281694893 0.001952078 6.114534491 38.190276956 0.006043676 0.015936605 0.000000001 0.017157445 0.600328975 0.006413726 0.070714155 0.014215624 7.685400112 100.523694813 0.014059122 0.000000115 0.031187489 0.023155682 0.192870342 0.059164868 0.201367214 0.201774626 0.010803420 8.999877313 473.378553518 0.053143606 0.000000727 0.005470839 0.261322271 0.831585655 0.237294210 0.468861461 0.517215940 0.937904588 0.909323102 10.051157556 12.542895782 0.000000001 0.000000001 0.000000001 0.000164433 0.000036123 0.000000022 0.358408401 0.012859203 0.000574391 1.448153560 0.397915097 20.537442821 1.076867270 0.000000001 0.000000001 0.000000001 0.000000001 0.000048714 0.000000001 0.060781533 0.415549396 0.000000001 0.000396696 0.310314758 7.097277556 65.627629649 0.000035218 0.000000001 0.000000001 0.000000001 0.345751107 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000002 1.034358861 0.000012457 95.636955183 0.000035218 0.000000001 0.000000001 0.000000001 0.000003503 0.000000001 0.000000001 0.000000001 0.671708678 0.000000001 0.000000001 0.000000002 0.000000103 0.000000020 0.308061439 1447.257099520 0.000035218 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000002 3.005385864 14.497872238 32.129865503 128.968287408 0.009980399 0.000171551 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.053690221 1.391312537 0.000000049 0.000000001 0.000000002 2.477659731 9.092154930 0.028933232 1.714547344 0.027530918 299.622425657 0.000324442 0.000000001 0.000000001 0.000000001 0.464137965 0.000000001 0.000000001 0.000001413 0.336490617 0.000000001 0.000000001 1.002362549 0.000000187 2.738291299 0.000003649 0.000000056 0.000000134 0.000086379 160.917526251 0.000002839 0.153378000 0.073582800 0.074317300 0.088155900 0.078303900 0.099883600 0.084390600 0.089190600 0.088531500 0.071727200 0.043004400 0.027108000 0.016637200 0.004659590 0.001780050 0.000748424 0.000832154 0.002374210 0.001391770